Plant Genome Research
Program
Awards:
2016
| 2016 NPGI-PRFB
| 2015
| 2014 PostDoc
| 2013
| 2013 PostDoc
| 2012
| 2012 PostDoc
| 2011
| 2010
2009
| 2008
| 2007
| 2006
| Maize
| 2005
| 2004
| 2003
| 2002
| 2001
| 2000
| 1999
| 1998
Plant
Genome Comparative Sequencing Program:
Awards
Fiscal Year 2016 Plant Genome Research Program Awards |
|||||
Award # | Principal Investigator & Co-Principal Investigators |
Lead Institution & Subaward* | Title | Total Awards ($) | Total Duration (Yrs) |
1547787 | Barbazuk, W. Brad | University of Florida | TOOLS-PGR: Alternative Splice Isoforms in Plant Genomes: Collection, Characterization and Evolutionary Relationships | $653,815 | 3 |
1545780 | Birchler, James A. Cheng, Jianlin |
University of Missouri-Columbia | RESEARCH-PGR: Genomic Balance Analysis in Maize | $2,202,797 | 5 |
1546899 | Briggs, Steven P. | University of California-San Diego | RESEARCH-PGR: Discovery and Evaluation of Inbred-specific and Hybrid-specific Regulatory Modules | $3,347,090 | 4 |
1546882 | Brutnell, Thomas P. Gallagher, Kimberly L. Mockler, Todd C. Myers, Christopher R. Van Eck, Joyce |
Donald Danforth Plant Science Center University of Pennsylvania* Cornell University* Boyce Thompson Institute for Plant Research* |
RESEARCH-PGR: Dissecting the Genetic Networks Underlying Kranz Anatomy in C4 Grasses | $7,802,826 | 4 |
1546657 | DellaPenna, Dean Buell, C. Robin Gore, Michael A. Yu, Jianming |
Michigan State University Cornell University* Iowa State University* |
RESEARCH-PGR: A Genome-level Approach to Balancing the Vitamin Content of Maize Grain | $5,514,916 | 5 |
1547796 | Ewers, Brent Kliebenstein, Daniel J. Mackay, David S. McClung, C. Robertson Weinig, Cynthia |
University of Wyoming University of California-Davis* University at Buffalo* Dartmouth College* |
RESEARCH: Predicting Genotypic Variation in Growth and Yield under Abiotic Stress through Biophysical Process Modeling | $4,939,967 | 5 |
1546879 | Frommer, Wolf B. Bailey-Serres, Julia N. Girke, Thomas Yang, Bing |
Carnegie Institution of Washington University of California-Riverside* Iowa State University* |
RESEARCH-PGR: SECRETome Project: Systematic Evaluation of CellulaR ExporT from plant cells | $4,619,008 | 5 |
1444461 | Frugoli, Julia Corbin, Victoria Feltus, Frank A. |
Clemson University | MCA-PGR: Spatial and Temporal Resolution of mRNA Profiles During Early Nodule Development | $1,932,798 | 5 |
1445025 | Gingeras, Thomas Birnbaum, Kenneth D. Jackson, David P. Martienssen, Robert Micklos, David McCombie, W. Richard Schatz, Michael C. Ware, Doreen |
Cold Spring Harbor Laboratory New York University* |
MaizeCode - An Initial Analysis of Functional Elements in the Maize Genome | $5,916,692 | 4 |
1546806 | Goldberg, Robert B. Harada, John J. Pellegrini, Matteo |
University of California-Los Angeles University of California–Davis* |
Research-PGR: Gene Regulatory Networks Required to Make a Soybean Seed | $5,154,063 | 5 |
1546863 | Guiltinan, Mark J. dePamphilis, Claude W. Marden, James H. Maximova, Siela N. Tiffin, Peter L. |
Pennsylvania State University University of Minnesota* |
RESEARCH-PGR: Discovery and Functional Characterization of Genes Regulating Plant Immunity in Perennial Crops | $3,568,549 | 4 |
1546727 | Hirsch, Candice N. McGaugh, Suzanne E. Yandeau-Nelson, Marna |
University of Minnesota Iowa State University* |
ECA-PGR: Dissecting Natural Mechanisms for Genome Content Variation and the Impact on Phenotypic Variation | $2,198,800 | 4 |
1546781 | Hollick, Jay B | Ohio State University | RESEARCH-PGR: Transcriptional Control of the Maize Genome | $1,104,337 | 3 |
1444339 | Howell, Stephen H. Bassham, Diane C. Brandizzi, Federica Stapleton, Ann E. |
Iowa State University Michigan State University* University of North Carolina-Wilmington* |
Role of the Unfolded Protein Response in Environmental Stress Tolerance in Maize | $2,185,825 | 3 |
1546837 | Jackson, David P. Bartlett, Madelaine Lippman, Zachary B. Nimchuk, Zachary |
Cold Spring Harbor Laboratory University of Massachusetts-Amherst* University of North Carolina-Chapel Hill* |
RESEARCH-PGR: Dissecting the Genomic Architecture of Functional Redundancy to Modulate Meristem Homeostasis and Crop Yields | $5,129,727 | 4 |
1547713 | Kosma, Dylan K. Douches, David S. Hammerschmidt, Raymond Santos, Patricia C. Schlauch, Karen A. |
University of Nevada-Reno Michigan State University* |
ECA-PGR: Dissecting the Transcriptional Networks Underlying Plant Wound Suberin Biosynthesis | $1,523,566 | 4 |
1546617 | Last, Robert L. Barry, Cornelius S. Jones, A. Daniel Pichersky, Eran Shiu, Shin-Han |
Michigan State University University of Michigan* |
RESEARCH-PGR: How do Plants Produce so Many Diverse Metabolites: A Computational and Experimental Comparative Genomics Investigation in the Solanaceae | $6,583,637 | 4 |
1444573 | Main, Doreen Abbott, Albert G. Ficklin, Stephen Jung, Sook Nelson, C. Dana Staton, Margaret Wegrzyn, Jill L. |
Washington State University University of Kentucky* University of Tennessee* University of Connecticut* |
Standards and Cyberinfrastructure that Enable "Big-Data" Driven Discovery for Tree Crop Research | $4,794,835 | 3 |
1546625 | Martin, Gregory B. Collmer, Alan Hutton, Samuel F. Panthee, Dilip Strickler, Susan |
Cornell University Boyce Thompson Institute Plant Research* North Carolina State University* |
RESEARCH-PGR: Leveraging Natural Variation in Tomato to Identify, Characterize, and Deploy New Sources of Disease Resistance | $4,230,934 | 4 |
1546873 | McSteen, Paula C. Joshi, Trupti Gallavotti, Andrea Moss, Britney Nemhauser, Jennifer L |
University of Missouri-Columbia Rutgers University * Whitman College* University of Washington* |
RESEARCH-PGR: Genomic and Synthetic Approaches Linking Auxin Signaling to Functional Domains in Maize | $5,163,987 | 4 |
1546869 | Miller, Allison J. Chitwood, Daniel H. Fennell, Anne Kwasniewski, Misha T. Londo, Jason P. |
Saint Louis University Donald Danforth Plant Science Center* South Dakota State University* University of Missouri-Columbia* USDA-ARS* |
RESEARCH-PGR: Adapting Perennial Crops for Climate Change: Graft Transmissible Effects of Rootstocks on Grapevine Shoots | $5,163,987 | 5 |
1546890 | Ming, Ray R. Moore, Richard C. Wang, Ming-Li Yu, Qingyi |
University of Illinois at Urbana-Champaign Miami University* Hawaii Agriculture Research Center* Texas A&M University* |
RESEARCH-PGR: Genomic Mechanisms of Domesticating a Y Chromosome in Papaya | $3,873,327 | 4 |
1546825 | Mosher, Rebecca A. Beilstein, Mark A. Freeling, Michael Subramaniam, Sabarinath |
University of Arizona University of California-Berkeley* |
RESEARCH-PGR: Deciphering the Link between RNA Directed DNA Methylation and Reproduction in Brassicaceae | $2,270,969 | 4 |
1546792 | Pawlowski, Wojciech P. Chen, Changbin Kianian, Penny Kianian, Shahryar F. Pillardy, Jaroslaw |
Cornell University University of Minnesota* |
RESEARCH-PGR: Understanding Recombination in Maize | $4,044,895 | 4 |
1444624 | Presting, Gernot G. | University of Hawaii | Characterizing the Interplay between Maize Retrotransposons and the Epigenome | $2,022,191 | 4 |
1546218 | Purugganan, Michael D. Bonneau, Richard Franks, Steven J. Vergara, Georgina |
New York University Fordham University* International Rice Research Institute (Philippines)* |
RESEARCH-PGR: Systems Genomics of Rice Stress Adaptation | $4,439,296 | 4 |
1546838 | Rhee, Seung Karp, Peter D. |
Carnegie Institution of Washington SRI International* |
TOOLS-PGR: Computational Infrastructure to Enable High-throughput, High-quality Annotations of Compartmentalized Metabolic Networks for Plant Genomes | $2,437,038 | 4 |
1546719 | Ross-Ibarra, Jeffrey Flint-Garcia, Sherry Hufford, Matthew B. Runcie, Daniel Sawers, Ruairidh |
University of California-Davis | RESEARCH-PGR: The Genetics of Highland Adaptation in Maize | $4,531,773 | 5 |
1546867 | Schmitz, Robert | University of Georgia | ECA-PGR: Somatic Genetic and Epigenetic Variations in Long-lived Perennial Trees and their Interactions with the Environment | $2,745,433 | 3 |
1444448 | Sharp, Robert E. Fritschi, Felix B. Joshi, Trupti Oliver, Melvin J. Peck, Scott C. |
University of Missouri-Columbia | Physiological Genomics of Maize Nodal Root Growth under Drought | $4,195,413 | 4 |
1550315 | Sheridan, William F. | University of North Dakota | Mutational Analysis of Maize Embryo Development | $201,110 | 2 |
1546900 | Strauss, Steven H. Hall, Troy E. Jiang, Yuan Li, Fuxin Vining, Kelly J. |
Oregon State University | RESEARCH-PGR: Analysis of Genes Affecting Plant Regeneration and Transformation in Poplar | $4,040,356 | 5 |
1547760 | Sundaresan, Venkatesan | University of California-Davis | RESEARCH-PGR: Zygotic Genome Activation in Rice | $1,707,863 | 3 |
1546742 | Sussman, Michael R. Ane, Jean-Michel M. Coon, Joshua J. Li, Lingjun Roy, Sushmita |
University of Wisconsin-Madison | RESEARCH PGR: An Interdisciplinary Approach to Deciphering Molecular Signaling Pathways Controlling Plant-Symbiont Associations in Legumes and Cereals | $2,707,714 | 3 |
1638507 | Topp, Christopher Baxter, Ivan Goldenfeld, Nigel D. Leakey, Andrew D. |
Donald Danforth Plant Science Center (DDPC) USDA-ARS, Midwest Area* University of Illinois at Urbana-Champaign* |
An Integrated Phenomics Approach to Identifying the Genetic Basis for Maize Root Structure and Control of Plant Nutrient Relations | $3,930,496 | 4 |
1445014 | Udall, Joshua A. Ramaraj, Thiruvarangan Ruoping, Chen Wendel, Jonathan F. |
Brigham Young University National Center for Genome Resources (NCGR)* BGI Americas* Iowa State University* |
Sequence Resources for Cotton, a Model System for Allopolyploid Crops | $1,499,999 | 2 |
1546862 | Vierstra, Richard D. | Washington University | RESEARCH-PGR: Defining the Sumoylation System in Maize and Its Roles in Stress Protection | $1,033,491 | 3 |
1546858 | Wurtele, Eve S. Bassler, Kevin< |
Iowa State University University of Houston* |
RESEARCH-PGR Orphan Genes: An Untapped Genetic Reservoir of Novel Traits Driving Evolutionary Adaptation and Crop Improvement | $2,719,137 | 4 |
1444568 | Yadegari, Ramin Dannenhoffer, Joanne M. Drews, Gary N. Vollbrecht, Erik W. (substitute Co-PI) |
University of Arizona Central Michigan University* University of Utah* Iowa State University* |
Gene Regulatory Networks in the Maize Endosperm | $7,351,648 | 5 |
Fiscal Year 2016 Plant Genome Research Program Awards National Plant Genome Initiative Postdoctoral Research Fellowships in Biology (NPGI-PRFB) |
|||||
Award # | Principal Investigator | Lead Institution | Title | Mentor(s) | Total Duration (Yrs) |
1612235 | Conklin, Phillip A. | Cornell University | Elucidating the Genetic Networks Controlling Formation of Lateral Organ Initial Cells: A Strategy Toward Increased Crop Yields in Maize | Scanlon, Michael | 3 |
1612033 | Ellis, Nathanael A. | Donald Danforth Plant Science Center Washington University |
Identifying Molecular Networks Underlying Root-Root Interactions in High Plant Density Adapted Maize | Topp, Christopher Tai, Yuan-Chuan |
3 |
1611853 | Harkess, Alex | Donald Danforth Plant Science Center | The Origins of Reproductive phasiRNAs in the Angiosperms | Meyers, Blake | 3 |
1612268 | Leiboff, Samuel A | USDA-Plant Gene Expression Center | Exploring Gene Networks in Maize Tassel and Sorghum Panicle Development during Drought | Hake, Sarah | 3 |
1612262 | MacQueen, Alice H | University of Texas at Austin North Dakota State University HudsonAlpha Institute for Biotechnology |
Genomics of Yield Variation and Physiology of Genotype-By-Environment Interactions in Common Bean \(Phaseolus vulgaris) | Juenger, Thomas McClean, Phil Schmutz, Jeremy |
3 |
1612170 | Mitchell, David | Pennsylvania State University | A Genome-wide Investigation of Light Intensity Effects on the Maize RNA Structurome | Bevilacqua, C. Phillip, Assmann, Sarah |
3 |
1611975 | Nelms, Bradlee | Stanford University | Specification and Differentiation of Maize Archesporial Cells during Early Anther Development | Walbot, Virginia | 3 |
1611875 | Potter, Kevin C. | University of North Carolina | Uncovering the Transcriptional Dynamics of Cytokinin Signaling in Rice | Kieber, Joseph | 3 |
1609024 | Seymour, Danelle K. | University of California-Irvine | Exploring the Causes and Consequences of Rapid Transposon Evolution in Grass Genomes | Gaut, Brandon | 3 |
1609014 | Taylor-Teeples, Mallorie | University of Washington | The Influence of Auxin-mediated Protein Degradation Rates on Developmental Patterning | Nemhauser, Jennifer | 3 |
1612951 | Wagner, Maggie R. | North Carolina State University | Effects of Breeding the Plant Microbiome and Feedbacks on Crop Health and Productivity | Balint-Kurti, Peter | 3 |
Fiscal Year 2015 Plant Genome Research Program Awards Advancing Biological Resources for Plant Genome Research (ABR-PG) |
|||||
Award # | Principal Investigator & Co-Principal Investigators | Lead Institution & Subaward Institutions | Title | Total Awards ($) | Total Duration (Yrs) |
1444893 | Aldwinckle, Herbert Yorke, James A. Mockaitis, Keithanne Zimin, Aleksey Yepes, Marcela |
Cornell University University Maryland College Park Indiana University |
ABR-PG: Developing Advanced Genomic Tools to Accelerate Linkage of Structural & Functional Diversity in Coffee | $1,623,758 | 2 |
1444561 | Alonso, Jose Heber, Steffen Stepanova, Anna N. Williams, Cranos M. |
North Carolina State University | Identification of Translational Hormone-Response Gene Networks and cis-Regulatory Elements | $3,199,404 | 5 |
1444503 | Balint-Kurti, Peter Johal, Gurmukh S Dilkes, Brian |
North Carolina State University Purdue University |
An Integrated Genomic and Functional Analysis of the Plant Hypersensitive Response | $3,121,102 | 4 |
1444532 | Bass, Hank Onokpise, Oghenekome U. Zhang, Jinfeng Dennis, Jonathan H. Tsolova, Violeta M. |
Florida State University |
Nuclease Profiling as an Integrative Resource for Maize Epigenomics | $2,133,825 | 4 |
Bogdanove, Adam Leach, Jan E. Voytas, Daniel F. McCouch, Susan R. Doyle, Erin |
Cornell University Colorado State University University Minnesota-Twin Cities Doane College |
Quantitative Trait Locus Editing for Crop Improvement | $5,499,997 | 4 | |
1444499 | Buell, C. Robin Soltis, Douglas E. Soltis, Pamela S. Doudareva, Natalia O'Connor, Sarah E. |
Michigan State University University of Florida Purdue University John Innes Centre |
Evolution of Specialized Metabolite Biosynthetic Pathways in the Lamiaceae: Sources of Chemical Diversity for Molecules Essential for Human Use and Plant Defense | $5,091,370 | 5 |
1444522 | Burke, John Rieseberg, Loren H. Andrade-Sanchez, Pedro Dechaine, Jennifer M. Bali, Khaled M. |
University of Georgia Indiana University University of Arizona Central Washington University University of California Division of Agriculture |
Evolutionary Genomics of Abiotic Stress Resistance in Wild and Cultivated Sunflowers | $4,172,290 | 4 |
1339246 | Carter, Clay Nikolau, Basil J. Thornburg, Robert W. Hampton, Marshall E. |
University of Minnesota-Twin Cities Iowa State University University of Minnesota Duluth |
Comparative Functional Genomics of Nectaries and Nectar in the Dicots | $1,814,628 | 3 |
1444435 | Chang, Geoffrey Saier, Milton H. Schroeder, Julian I |
University of California-San Diego | Center for Research on Plant Transporters (CROPS) - A Plant Community Resource for the Structure and Function of Plant Membrane Transporters Underlying Important Crop Traits | $6,064,596 | 4 |
1444552 | Chen, Z. Jeffrey Stelly, David Scheffler, Brian E. Saski, Christopher Grimwood, Jane |
University of Texas at Austin Texas A&M AgriLife Research USDA, Agricultural Research Service Clemson University HudsonAlpha Institute for Biotechnology |
Sequencing a Reference-grade Genome of the Domesticated Allotetraploid Cotton: the World's Largest Source of Renewable Textile Fiber | $2,237,255 | 2 |
1444449 | Clark, Richard Ramirez, Ricardo A. |
University of Utah Utah State University |
Genomics of Resistance to Mite Herbivores Associated with Drought Stress in Cereals | $1,069,975 | 4 |
1444612 | Comai, Luca Britt, Anne B. Tan, EK Han Khan, Awais |
University of California-Davis International Potato Center |
Rapid and Targeted Introgression of Traits via Genome Elimination | $1,597,646 | 3 |
1444585 | Davis, Thomas | University of New Hampshire | ABR-PG: The Use of Pentaploid Surrogates for Assembly and Anchoring of Octoploid Strawberry Genomes | $411,417. | 2 |
1444514 | Dawe, R. Kelly Birchler, James A. Jiang, Jiming |
University of Georgia University Missouri-Columbia University Wisconsin-Madison |
Functional Genomics of Maize Centromeres | $4,616,241 | 5 |
1444806 | Fernandez-Baca, David Town, Christopher D. Farmer, Andrew D. Cannon, Steven B. DeBarry, Jeremy D |
Iowa State University J. Craig Venter Institute, Inc. National Center for Genome Research USDA-Agricultural Research Service, Midwest University of Arizona |
Federated Plant Database Initiative for the Legumes | $2,042,020 | 3 |
1444490 | Gregory, Brian Beilstein, Mark A. Lyons, Eric |
University of Pennsylvania University of Arizona |
Structural, Functional, and Evolutionary Analysis of Long Non-coding RNAs in Control of Stress Response and the Epigenome in Diverse Plant Species | $2,561,338 | 4 |
1444202 | Hanson, Andrew McCarty, Donald R. Gregory, Jesse F. Henry, Christopher S |
University of Florida University of Chicago |
The B Vitamin/Cofactor Network: Command and Control of Metabolism in Changing Conditions | $2,123,935 | 4 |
1340112 | Jaiswal, Pankaj Stevenson, Dennis W. Todorovic, Sinisa Arnaud, Elizabeth Mungall, Christopher J. |
Oregon State University New York Botanical Garden Oregon State University International Plant Genetic Resources Lawrence Berkeley National Laboratory |
cROP: Common Reference Ontologies and Applications for Plant Biology | $2,633,417 | 3 |
1444533 | Juenger, Thomas Fay, Philip A. Schmutz, Jeremy |
University of Texas at Austin USDA, Agricultural Research Service HudsonAlpha Institute for Biotechnology |
The Genetics and Genomics of Local Adaptation and Acclimation in Panicum Grasses | $4,155,099 | 4 |
1444478 | Kausch, Albert Dellaporta, Stephen L. Moreno, Maria A. Zhang, Zhanyuan J. |
University of Rhode Island Yale University University of Missouri-Columbia |
Transforming Cereal Genomics: Tooling Up For Empowered Phenotyping Platforms | $2,128,996 | 4 |
1444543 | Kirst, Matias Barbazuk, William B. Resende, Marcio F. De los Campos, Gustavo |
University of Florida University of Alabama at Birmingham |
Genome and Transcriptome Based Prediction and Regulator Inference of Molecular and Whole-Plant Phenotypes | $1,956,424 | 4 |
1444567 | Leebens-Mack, James Xiang, JennyQiuyun Tsai, Chung-Jui Wadl, Phillip A. Alabady, Magdy, S. |
University of Georgia |
The Dogwood Genome Project: A Model for Woody Ornamental Genomics | $1,495,309 | 2 |
1444987 | Liu, Zhongchi | University of Maryland | Developmental Mechanisms Underlying Fleshy Fruit Diversity in Rosaceae | $3,029,222 | 5 |
1339389 | Poland, Jesse | Kansas State University | GPF-PG: Genome Structure and Diversity of Wheat and Its Wild Relatives | $1,585,420 | 2 |
1444549 | Scheible, Wolf | Noble Foundation | Genome-wide Analysis of Small Signaling Peptides in Medicago truncatula with an Emphasis on Macro-nutrient Regulation of Root and Nodule Development | $3,319,729 | 4 |
1444400 | Schiefelbein, John | University of Michigan | Roots and Root Hairs: Comparative Molecular Studies Across Land Plants | $1,355,691 | 4 |
1444575 | Schlueter, Jessica | University of North Carolina-Charlotte | ABR-PG: Sequencing the Hexaploid Oat Genome Using Diploid References | $1,488,244 | 2 |
1444507 | Smith, Laurie | University of California-San Diego | Genomic Analysis of Leaf Cuticle Development and Functional Diversity in Maize | $3,255,807 | 5 |
1444611 | Sork, Victoria | University of California-Los Angeles | Sequencing and Annotating the Valley Oak Genome | $1,976,532 | 3 |
1444456 | Spalding, Edgar | University of Wisconsin-Madison | Enabling Cold Tolerant Maize Using Genomic and Machine Vision Phenomic Approaches | $4,151,008 | 4 |
1444974 | Sundaresan, Venkatasan | University of California-Davis University of Arkansas-Fayetteville* University of Arkansas-Pine Bluff |
Genomics of Host-Microbiome Interactions in Rice | $1,299,497 | 3 |
1444539 | Van der Knaap, Esther Ding, Biao Caicedo, Ana Tieman, Denise M. Mueller, Lukas |
University of Georgia University of Massachusetts-Amherst University of Florida Boyce Thompson Institute Plant Research |
Exploitation of Genetic and Epigenetic Variation in the Regulation of Tomato Fruit Quality Traits | $86,804 | 5 |
1444571 | Weinig, Cynthia Mackay, David S. Ewers, Brent Covington, Michael F. Maignien, Lois |
University of Wyoming SUNY at Buffalo University of Wyoming University of California-Davis Marine Biological Laboratory |
A Systems Analysis of Plant Growth Promotion by the Rhizosphere Microbiome | $3,244,058 | 5 |
1339211 | Xu, Kenong Dardick, Chris Tabb, Amy |
Cornell University - Geneva USDA, Agricultural Research Service |
Elucidating the Gene Networks Controlling Branch Angle and the Directional Growth of Lateral Meristems in Trees | $1,556,406 | 3 |
Fiscal Year 2015 ERA-CAPS Awards Joint NSF/European Research Area Network Coordinating Action in Plant Sciences (ERA-CAPS) |
|||||
Award # | Principal Investigator | Lead Institution & Subaward Institutions | Title | Total Awards ($) | Total Duration (Yrs) |
1539848 | Gepts, Paul | University of California-Davis | Joint NSF/ERA-CAPS: Collaborative Research: BEAN-ADAPT - Genetic Architecture of Rapid Evolutionary Adaptation to Changing Environments in Domesticated Phaseolus Bean Species | $358,722 | 3 |
1539838 | Jackson, Scott | University of Georgia | Joint NSF/ERA-CAPS: Collaborative Research: BEAN-ADAPT - Genetic Architecture of Rapid Evolutionary Adaptation to Changing Environments in Domesticated Phaseolus Bean Species | $742,879 | 3 |
1540019 | Johnson, Mark | Brown University | Joint NSF/ERA-CAPS: EVOREPRO - Evolution of Plant Reproductive Processes in Plants | $539,100 | 3 |
1539831 | Klee, Harry |
University of Florida |
Joint NSF/ERA-CAPS: RegulaTomE - Regulating Tomato Quality through Expression | $2,374,201 | 3 |
1539638 | Larsen, Paul | University of California-Riverside | Joint NSF/ERA-CAPS: Al-UCIDATE - Towards A Molecular Understanding of Aluminum Genotoxicity for Crop Improvement | $799,971 | 3 |
1541256 | McCombie, W. Richard | Cold Spring Harbor Laboratory | Joint NSF/ERA-CAPS: INTREPID - INvestigating TRiticeae EPIgenomes for Domestication | $1,453,176 | 3 |
1539834 | Nemhauser, Jennifer | University of Washington | Joint NSF/ERA-CAPS: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae Crops | $522,210 | 3 |
Fiscal Year 2015 NPGI-PRFB Awards National Plant Genome Initiative Postdoctoral Research Fellowships in Biology (NPGI-PRFB) |
|||||
Award # | Principal Investigator | Lead Institution & Subaward Institutions | Title | Mentor(s) | Total Duration (Yrs) |
1523876 | Butler, Nathaniel | University of Wisconsin | Enhancing Meiotic Recombination And Fine Mapping Resolution In Diploid Populations Of Potato Using Sequence-Specific Nucleases | Janksy, Shelley H. |
3 |
1523793 | Campbell, Michael | Cold Spring Harbor Laboratory | Generate and Distribute Graph-Based Structural Annotations and Tools for Agricultural Plant Populations | Ware, Doreen |
3 |
1523917 | Carlson, Keisha | University of Puget Sound | The Molecular and Physiological Roles of Phytochromes in Shaping Plant Body Architecture in Tomato | Madlung, Andreas |
3 |
1523668 | Frank, Margaret | Donald Danforth Plant Science Center | A Role for Long-Distance RNA Signaling in Tomato Via Graft-Induced Vigor | Chitwood, Daniel H. |
3 |
1523814 | Freese, Nowlan | University of North Carolina-Charlotte | Molecular Basis of Salt Tolerance in Rice | Loraine, Ann |
3 |
1523861 | Gault, Christine | Cornell University and Michigan State University | Identifying Freezing Tolerance Genes in the Perennial Grass Genus Tripsacum as a Step Towards Developing Freezing-Tolerant Maize | Buckler, Edward S. Thomashow, Michael F. |
3 |
1523733 | Josephs, Emily | University of California-Davis | Polygenic Adaptation to Domestication in Genetic Networks | Coop, Graham |
3 |
1523423 | Lemmon, Zachary | Cold Spring Harbor Laboratory | The Role of Meristem Size in Pepper Architectural Diversity | Lippman, Zachary B. | 3 |
1523752 | Moyers, Brooke | Colorado State University | Using Genotype and Environment to Predict Water Use Physiology in Rice | McKay, John | 3 |
Fiscal Year NPGI - PRFB 2014 Awards National Plant Genome Initiative Postdoctoral Research Fellowships in Biology (NPGI-PRFB) |
|||||
Award # | Principal Investigator | Institution | Title | Mentor(s) | Total Duration (Yrs) |
1401840 | Afkhami, Michelle | Michigan State University University of Toronto |
Multiple Mutualist Effects: Linking Functional Genomics to the Ecology of Mutualist Diversity in Microbe-Medicago Symbioses | Friesen, Maren L. Shachar-Hill, Yair Stinchcombe, John |
3 |
1401855 | Cheung, Lily | Stanford University | Quantitative Imaging and Mathematical Modeling of Sugar Allocation in Plant Roots | Frommer, Wolf B. | 3 |
1400818 | Freund, Dana | University of Minnesota-Twin Cities | A Systems Biology Approach to Understanding Lysine Acetylation in the Regulation of Plant Metabolism and the Effects of Atmospheric Carbon Dioxide | Hegeman, Adrian D. Cohen, Jerry D. |
3 |
1401864 | Grillo, Michael | Michigan State University | Natural Variation for Specificity Mediated by Signaling Interactions in the Legume-Rhizobium Mutualism: A Population Genomic Approach in Medicago truncatula | Heath, Katy | 3 |
Lovell, John | University of Texas at Austin DOE Joint Genome Institute HudsonAlpha Biotechnology IPK-Gatersleben (Germany) |
Determining the Genomic Basis of Heterosis and Apomixis in Panicum Grasses | Juenger, Thomas Rohksar, Daniel Schmutz, Jeremy Sharbel, Timothy |
3 | |
1400616 | Nannas, Natalie | University of Georgia | Engineering a Synthetic Centromere for Artificial Chromosome Segregation in Maize | Dawe, R. Kelly | 3 |
1402183 | Niederhuth, Chad | University of Georgia | Epigenomic Engineering in Soybeans to Unlock Cryptic Genetic Variation | Schmitz, Robert J. | 3 |
1402495 | Marklez, R. Cody | University of California-Davis | Developing a Systems Level Model of Resource Allocation and Partitioning in Brassica Rapa to Predict Growth Across Multiple Genotypes and Environments | Maloof, Julin Kliebenstein, Daniel |
3 |
1401572 | VanBuren, Robert | USDA-ARS/Donald Danforth Plant Science Center | Characterization of the Physiological and Genomic Signatures of Drought Induced CAM Photosynthesis Evolution | Allen, Douglas K. Mockler, Todd |
3 |
1401682 | Wisecaver, Jennifer | Vanderbilt University John Innes Centre (UK) | The Evolution of Secondary Metabolic Gene Clusters in Plants | Rokas, Antonis Osbourn, Anne |
3 |
1402064 | Zinkgraf, Matthew | U.S. Forest Service-Pacific Southwest Research Station University of California-Davis |
Transcriptional Regulation and Gene Networks Underlying Secondary Growth in Populus | Groover, Andrew Filkov, Vladimir |
3 |
Fiscal Year 2013 Plant Genome Research Program Awards Faculty Early Career Development (CAREER) Program Mid-Career Investigator Award in Plant Genome Research (MCA-PGR) Research in Undergraduate Institutions (RUI) Research Coordination Network (RCN) Program ERA-CAPS (Coordinating Action in Plant Sciences) Program |
|||||
Award # | Principal Investigator | Institution | Title | Total Award ($) | Total Duration (Yrs) |
1339207 | Axtell, Michael | Pennsylvania State University Knox College* | Reference Annotations for Small RNA-producing Genes in Plants | $885,370 | 3 |
1339130 | Barkan, Alice | University of Oregon-Eugene Donald Danforth Plant Science Center* |
Translational Dynamics of Leaf and Chloroplast Development in Maize | $3,819,958 | 4 |
1339282 | Bevilacqua, Philip C. | Pennsylvania State University-University Park University of Rochester* |
The In Vivo Rice RNA Structurome in Abiotic Stress Sensing and Response | $2,301,570 | 4 |
1339198 | Birchler, James | University of Missouri-Columbia | Maize Artificial Chromosomes | $1,755,956 | 4 |
Browse, John | Washington State University Montana State University* SUNY at Stony Brook* University of Missouri-Columbia* University of Nebraska-Lincoln* |
Biochemical Genomics: Deciphering the Chemical Factories of Oilseeds | $4,019,424 | 4 | |
1339246 | Carter, Clay | University of Minnesota-Twin Cities Iowa State University* University of Minnesota-Duluth* CINESTAV ( Irapuato, Mexico) University of Victoria (Canada) |
Comparative Functional Genomics of Nectaries and Nectar in the Dicots | $1,814,628 | 3 |
1339346 | Cook, Douglas | University of California–Davis Florida International University* Harran University (Turkey) |
Deducing the Genomic Footprint and Functional Impact of Chickpea Domestication on Nitrogen Fixation | $3,347,609 | 4 |
1339362 | Coruzzi, Gloria | New York University Centre National de la Recherche Scientifique (France)* University of Illinois at Urbana-Champaign* Cold Spring Harbor Laboratory |
NutriNet: A network inspired approach to improving Nutrient Use Efficiency (NUE) in crop plants | $2,518,381 | 4 |
1339185 | Dinesh-Kumar, Savithramma | University of California-Davis | Genomic Approaches to Unravel Virulence and Resistance Determinants of Vector-transmitted Viruses in Tomato | $1,640,161 | 3 |
1339238 | Dooner, Hugo | Rutgers University Montclair State University* |
A Sequence-Indexed Reverse Genetics Resource for Maize: A Set of Lines with Single Ds-GFP Insertions Spread throughout the Genome | $1,347,314 | 3 |
1339332 | Doust , Andrew | Oklahoma State University Brigham Young University* University of California-Berkeley* West Virginia University* |
The Genetic Architecture of Tillering in Panicoid Cereals | $2,396,440 | 4 |
1238231 | Dvorak, Jan | University of California–Davis University of Georgia* John Hopkins University – School of Medicine* Cold Spring Harbor Laboratory University of Arizona Agriculture and Agri-Food Canada (Canada) Chinese Agricultural University (China) Nanjing Agricultural University (China) Northwest A&F University (China) INRA/IBP (France) Helmholtz Center (Germany) University of Zurich (Switzerland) |
Sequencing the Aegilops tauschii Genome | $6,785,341 | 3 |
1340050 | Evans, Matthew | Carnegie Institution of Washington Iowa State University* Ohio State University* Oregon State University* South Dakota State University* Stanford University* Wisconsin Lutheran College* |
Genetic and Epigenetic Regulation of Gametophyte Development and Transposon Expression in Maize | $4,189,994 | 4 |
1339134 | Florea, Liliana | Johns Hopkins University | Building Better Genome Assemblies and Gene Models with RNA-seq Data | $458,778 | 2 |
1339388 | Hanzawa, Yoshie | University of Illinois at Urbana-Champaign | Network Landscape of Photothermal Flowering in Soybean | $2,524,248 | 3 |
1339194 | Jackson, Scott | University of Georgia University of Oklahoma-Norman* |
Comparative-, Functional-, and Epi-Genomics of Legumes and Nodule Formation | $2,530,455 | 4 |
1340112 | Jaiswal, Pankaj | Oregon State University Lawrence Berkeley National Laboratory* New York Botanical Garden* Bioversity International/CGIAR (France)* Aberystwyth University (United Kingdom)* University at Buffalo |
cROP: Common Reference Ontologies and Applications for Plant Biology | $4,044,134 | 3 |
1339237 | Jander, Georg | Boyce Thompson Institute University of Bern (Switzerland) Aarhus University (Denmark) Technical University of Munich (Germany) University of Sheffield (United Kingdom) |
Joint NSF/ERA-CAPS: Mechanisms of Natural Variation in Maize Herbivore Resistance | $650,614 | 3 |
1339125 | Kliebenstein, Daniel | University of California-Davis | Evolution and Domestication of Core Eudicot Defense Mechanisms against a Common Generalist Pathogen | $1,370,850 | 5 |
1339239 | Luan, Sheng | University of California-Berkeley | MCA-PGR: Genetic and Genomic Approaches to Understanding Low-K Tolerance in Rice | $1,384,431 | 4 |
1339128 | Lucas, William | University of California-Davis | The Angiosperm Sieve Tube System: Elucidating Gene Regulatory Networks Involved in Phosphate Acquisition & Homeostasis | $1,370,850 | 3 |
1339222 | Madlung, Andreas | University of Puget Sound California Polytechnical University-San Luis Obispo Boyce Thompson Institute |
RUI: Comparative Transcriptomic and Proteomic Analysis of Phytochrome Responses in Tomato | $1,020,208 | 5 |
1339229 | Meyers, Blake | University of Delaware Stanford University* University of Texas at Austin* |
Regulatory Hierarchies and Roles of Non-Coding RNAs in Maize Anthers | $6,365,385 | 4 |
1339393 | Morrell, Peter | University of Minnesota-Twin Cities Washington University-School of Medicine* |
Deleterious Mutations and the Response to Strong Selection in a Self-fertilizing Crop | $1,161,444 | 3 |
1339156 | Pires, J. Chris | University of Missouri-Columbia University of Arizona* |
Polyploidy and Plasticity in the Crop Brassicas | $2,179,716 | 3 |
1339287 | Rose, Jocelyn | Cornell University Boyce Thompson Institute* |
High Resolution Functional Genomics of Fleshy Fruit Development and Environmental Responses | $4,696,930 | 5 |
1350189 | Subramanian, Sen | South Dakota State University | CAREER: microRNA regulation of spatial gene expression during symbiotic nodule development | $659,009 | 5 |
1340058 | Sumner, Lloyd W. | Samuel Roberts Noble Foundation | RCN: Integrating and Coordinating a National and International Plant, Algae, and Microbial Metabolomics Research Coordination Network | $499,797 | 5 |
1340001 | Tang, Guiliang | Michigan Tech University Kansas State University* University of California–Riverside* Iowa State University |
Inactivation of microRNAs in Crop Plants Using Short Tandem Target Mimic (STTM) Technology | $2,499,979 | 3 |
1339412 | Udall, Joshua | Brigham Young University National Center for Genome Resources* University of Utah* |
Structural Variation of Diploid and Polyploid Plant Genomes | $1,490,891 | 3 |
1339325 | Vierstra, Richard | University of Wisconsin-Madison | Molecular Dissection of Autophagy in Maize and its Roles in Nutrient Recycling and Stress Protection | $968,953 | 3 |
1339209 | Voytas, Daniel | University of Minnesota-Twin Cities | Plant Genome Engineering using DNA Replicons | $1,102,010 | 3 |
1238057 | Westwood, James H. | Virginia Polytechnic Institute and State University Pennsylvania State University* University of California-Davis* University of Virginia* |
Evolutionary Gain and Loss of Function in Parasitic Plant Genomes | $3,406,833 | 3 |
1339348 | Wise, Roger | Iowa State University Cornell University* Indiana University* University of Florida-Gainesville* Tuskegee University* Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) (Germany) Imperial College (United Kingdom) |
Joint NSF/ERA-CAPS: Host Targets of Fungal Effectors as Keys to Durable Disease Resistance | $2,500,000 | 4 |
1339211 | Xu, Kenong | Cornell University-Geneva USDA-ARS Appalachian Fruit Research Station |
Elucidating the Gene Networks Controlling Branch Angle and the Directional Growth of Lateral Meristems in Trees | $1,556,406 | 3 |
1237993 | Young, Nevin D. | University of Minnesota–Twin Cities Boyce Thompson Institute* Hamline University* J. Craig Venter Institute* National Center for Genome Research* |
Expanding the Medicago truncatula Hapmap as a Platform for Exploring the Genetics of Legume Symbioses | $2,999,999 | 3 |
Fiscal Year 2013 Awards National Plant Genome Initiative Postdoctoral Research Fellowships in Biology (NPGI-PRFB) |
|||||
Award # | Principal Investigator | Institution | Title | Mentor(s) | Total Duration (Yrs) |
1306574 | Baker, Robert L. | University of Wyoming | Genome wide Associations between Anatomy, Crop-specific Resource Allocation Strategies, and Water Use Efficiency | Weinig, Cynthia Ewers, Brent |
3 |
1306622 | Friedline, Christopher J. | Virginia Commonwealth University | Barking up the Right Trees: the Influence of Forest Fire on the Genetic Architecture of Pine Populations in the Southeastern United States | Eckert, Andrew J. | 3 |
1306848 | Gray, Sharon B. | University of California - Davis | The Effects of Elevated Atmospheric Carbon Dioxide on Development and Cell Type-Specific Gene Expression of Tomato (Solanum lycopersicum) Roots | Brady, Siobhan | 3 |
1301640 | Masonbrink, Rick | Iowa State University | Investigating Centromere Evolution in Diploid and Polyploid plants in the Cotton Genus, Gossypium | Wendel, Jonathan | 3 |
Schnable, James | Donald Danforth Plant Science Center | A Comparative Genomics Approach to Studying C4 Photosynthesis | Brutnell, Thomas | 3 | |
12309286 | Thomas, Julie | University of Arkansas | Analysis of Alternative Splicing in Drought Regulated Genes for Stress Tolerance in Rice | Pereira, Andy | 3 |
Fiscal Year 2012 Awards Improving Plant Genome Annotation (IPGA) Faculty Early Career Development (CAREER) Program |
|||||
Award # | Principal Investigator | Institution | Title | Total Award ($) | Total Duration (Yrs) |
1238030 | Ainsworth, Elizabeth | University of Illinois at Urbana-Champaign University of Florida-Gainsville* Donald Danforth Plant Science Center |
MCA-PGR: Genetic and Genomic Approaches to Understand and Improve Maize Responses to Ozone | $5,733,826 | 5 | 1238731 | Bailey, Donovan | New Mexico State University Zurich Botanical Garden |
MCA-PGR: A Phylogenetically Informed Investigation of Transcriptome Evolution and Transcriptome Response of the Tropical Crop Genus Leucaena (Leguminosae) to Psyllid Herbivores | $861,269 | 3 | 1126950 | Bailey-Serres | University of California-Riverside University of California-Davis* Emory University* |
Integrative Analysis of Plasticity in Cell Fate Determination in Plants | $4,107,616 | 4 | 1237969 | Buell, C. Robin | Michigan State University University of Wisconsin-Madison* Virginia Polytechnic Institute and State University* |
Unraveling the Heterozygosity, Allelic Composition, and Copy Number Variation of Potato | $5,774,862 | 4 | 1238048 | Chen, Z. Jeffrey | University of Texas at Austin Uversity of California-Berkeley/USDA-ARS* |
Genomic and Functional Analysis of Circadian Rhythms and Growth Vigor in Maize | $1,499,998 | 5 | 1238201 | Greenberg, Jean | University of Chicago Rockefeller University* |
Post-translational Modifications as Modulators of Crop Plant Defense Signaling: a Systems Approach | $2,053,146 | 3 | 1238040 | Harmer, Stacey | University of California-Davis University of Virginia* |
Investigating the Mechanistic Basis and Adaptive Significance of the Coordination of Plant Growth by External and Internal Cues | $1,533,763 | 3 | 1238812 | Hegeman, Adrian | University of Minnesota-Twin Cities | Improving Dynamic Metabolic Flux Analysis for the Discovery of Molecular Determinants of Plant Phenotypes | $3,379,162 | 5 | 1238885 | Keller, Stephen | University of Maryland Center for Environmental Sciences Agriculture and Agri-Food, Canada |
Combining Genomics, Remote Sensing, and Geospatial Modeling to Understand Adaptation to Growing Season Length in Balsam Poplar | $1,495,713 | 4 | 1238051 | Kieber, Joseph | University of North Carolina-Chapel Hill Dartmouth College* University of North Carolina-Charlotte* |
Genomic Approaches to Understanding Cytokinin Signaling and Function in Rice | $3,521,854 | 4 | 1238246 | Lintz, Heather | Oregon State University University of Iowa |
A Miniaturized Automated Sensor for Phenotyping Bud Break in Natural Plant Populations | $406,306 | 3 | 1237880 | Lippman, Zachary | Cold Spring Harbor Laboratory Boyce Thompson Institute for Plant Research * |
Genes and Networks Regulating Shoot Maturation and Flower Production in Tomato and Related Nightshades | $2,636,571 | 3 | 1238187 | Poland, Jesse | Kansas State University USDA-ARS University of Arizona |
A Field-based High Throughput Phenotyping Platform for Plant Genetics | $768,054 | 3 | 1237975 | Ronald, Pamela | University of California-Davis University of Texas at Austin * Iowa State University* |
Network-Guided Predictions and Characterization of Genes Governing Pattern Recognition Receptor-Mediated Immunity in Cereals | $2,668,339 | 3 | 1149603 | Salas-Fernandez, Maria | Iowa State University | CAREER: Photoprotection for Tolerance to Abiotic Stress: Discovery through Natural Genetic Variation | $608,461 | 5 | 1238142 | Scanlon, Michael | Cornell University Truman State University* University of Minnesota-Twin Cities* Iowa State University* Cold Spring Harbor Laboratory* Kansas State University* University of Georgia* |
Genetic Networks Regulating Structure and Function of the Maize Shoot Apical Meristem | $7,079,252 | 5 | 1237931 | Springer, Nathan | University of Minnesota-Twin Cities University of California-Berkeley* Texas Advanced Computing Center/University of Texas at Austin* Hamline University* |
Causes and Consequences of Epigenetic Variation in Maize | $3,424,556 | 4 | 1237936 | Sussman, Michael | University of Wisconsin-Madison | An Interdisciplinary Approach to Deciphering the Molecular Dialogue between the Plasma Membrane and Nucleus of Medicago truncatula | $3,384,858 | 3 | 1238202 | Vollbrecht, Erik | Iowa State University Carnegie Institution for Science * University of North Texas* University of California-Berkeley/USDA-ARS* Cold Spring Harbor Laboratory* Purdue University* |
Natural Variation and Drought Responses in Developing Maize Inflorescences | $6,817,527 | 5 | 1238125 | Walia, Harkamal | University of Nebraska-Lincoln Arkansas State University* Australian Centre for Plant Functional Genomics International Rice Research Institute, The Philippines Cornell University |
Physiological and Genetic Mechanisms Underlying Salt Tolerance in Rice Across Developmental Stages | $2,035,509 | 3 | 1238189 | White, Frank | Kansas State University Cornell University* Iowa State University* Indiana State University* |
TAL Effector Targeting in Plant Genomes | $2,983,056 | 3 |
Fiscal Year 2012 Awards National Plant Genome Initiative Postdoctoral Research Fellowships in Biology (NPGI-PRFB) |
|||||
Award # | Principal Investigator | Institution | Title | Mentor(s) | Total Duration (Yrs) |
1202793 | Edger, Patrick P. | University of Arizona University of California - Berkeley |
Constructing Plant Metabolic Networks and a Comparative Framework to Identify Genes to Manipulate Biosynthetic Pathways in Crops | Barker, Michael Freeling, Michael |
3 | 1202682 | Gehan, Malia A. | Donald Danforth Plant Science Center | Improving Environmental Stress Tolerance in the Grass Model, Brachypodium distachyon | Mockler, Todd | 3 | 1202779 | Greenham, Katie M. | Dartmouth College | Computation Analysis of Global Gene Expression Changes at the Intersect of the Circadian Clock and the Response to Drought in the Crop Plant Brassica rapa | McClung, C. Robertson | 3 | 1202724 | Hirsch, Cory D. | Michigan State University University of Minnesota – Twin Cities |
A Systems Biology Approach to Understanding Anthocyanin Biosynthesis and Regulation in Potato | Buell, C. Robin Douches, David Springer, Nathan |
3 | 1202803 | Meyer, Rachel S. | New York University | Selection for Salt Tolerance in African Rice (Oryza glaberrima) in Indigenous Riverine Agricultural Habitats of Western Africa | Purugganan, Michael | 3 | 1202795 | Peiffer, Jason A | North Carolina State University | Combinatorial Optimization of Molecular Plant Breeding Strategies | McKay, Trudy F. C. Stone, Eric A. |
3 | 1202778 | Puzey, Joshua R | Duke University University of Kansas-Lawrence Harvey Mudd College |
Connecting Genetics and Form: Developing an Automated High-throughput Phenotyping Platform using Mimulus | Willis, John Kelly, John Gerbode, Sharon |
3 | 1202666 | Ellison, Shelby L. | University of Wisconsin-Madison | Genome-wide Association Study of Domestication Traits in Carrot (Daucus carota L.) Inbred Lines | Simon, Philipp Krysan, Patrick Yandell, Brian |
3 |
Fiscal Year 2011 Awards |
|||||
Award # | Principal Investigator | Institution | Title | Total Award ($) | Total Duration (Yrs) |
1126950 | Baxter, Ivan | Donald Danforth Plant Science Center / USDA-ARS University of Minnesota-Twin Cities* Purdue University* Cornell University* |
Mineral Nutrient Gene Discovery and Gene X Environment Interactions Using the Nested Association Mapping Population in Maize | $1,357,133 | 3 |
1127059 | Bedinger, Patricia | Colorado State University University of California-Davis* University of Missouri-Columbia* Indiana University* |
Deciphering Mechanisms of Prezygotic Reproductive Isolation in Solanum | $5,781,452 | 5 |
1127079 | Bennetzen, Jeffrey | University of Georgia | Analysis of Genetic and Environmental Inputs into Accurate and Inaccurate Double Strand Break Repair in Plants | $898,783 | 3 |
1025976 | Braun, David | University of Missouri-Columbia University of Florida-Gainsville* Purdue University* University of Nebraska-Lincoln* Saint Michael's College* University of Vermont-Burlington* |
Genetic and Genomic Approaches to Understanding Long-Distance Transport and Carbon Partitioning in Plants | $6,606,103 | 5 |
1126267 | Brendel, Volker | Iowa State University University of North Carolina-Charlotte* Oakland University* |
IPGA: Characterization, Modeling, Prediction, and Visualization of the Plant Transcriptome | $1,499,996 | 2 |
1025974 | Carlson, John | Pennsylvania State University University of Notre Dame* University of Tennessee-Knoxville* University of Missouri-Columbia* Clemson University* Michigan Technological University* University of West Alabama* |
Comparative Genomics of Environmental Stress Responses in North American Hardwoods | $3,700,678 | 4 |
1025642 | Collmer, Alan | Cornell University Boyce Thompson Institute for Plant Research* Wells College* North Carolina State University* / North Carolina State University Mountain Horticultural Research & Extension Center* |
Leveraging Genomics Resources and Wild Species of Tomato to Identify New Sources of Disease Resistance | $4,187,897 | 4 |
1025869 | Doebley, John | University of Wisconsin-Madison | Functional Analysis of Selected Genes in Maize | $690,770 | 3 |
1125620 | Grotewold, Erich | Ohio State University University of Toledo* |
Systems Approaches to Identify Gene Regulatory Networks in the Grasses | $4,234,908 | 4 |
1025398 | Hanson, Andrew | University of Florida - Gainsville University of Chicago* |
Comparative Genomics-Driven Discovery of Maize Metabolic Functions | $1,803,873 | 3 |
1054444 | Holliday, Jason | Virginia Polytechnic Institute and State University | CAREER: Integrating Whole-Genome Association Mapping and Landscape Genomics to Understand Climatic Adaptation in Populus | $1,542,864 | 5 |
1025636 | Last, Robert | Michigan State University University of Michigan* |
Building and Operating Chemical Factories: Comparative Studies of Biochemical Pathways for Specialized Metabolites in the Solanum | $4,586,618 | 4 |
1126481 | Lushbough, Carol | University of South Dakota | Integrating the BioExtract Server with the iPlant Collaborative | $725,789 | 3 |
1126935 | Mackenzie, Sally A. | University of Nebraska-Lincoln | Intersection of the Plant Epigenome and Bioenergetics in Phenotypy | $599,998 | 2 |
1116561 | McCarty, Donald |
University of Florida - Gainsville Iowa State University* |
UniformMu: A Transposon Resource for Functional Genomics of Maize | $2,111,109 | 2 |
1025965 | McClung, C. Robertson | Dartmouth University University of Wyoming* University of Wisconsin-Madison* Oregon State University* |
Genetic Analysis of Natural Variation in the Control of Water Use Efficiency and Response to Drought Stress in Brassica rapa | $5,149,802 | 5 |
1127017 | Nelson, Timothy | Yale University Donald Danforth Plant Science Center* Iowa State University* Cornell University* Boyce Thompson Institute for Plant Research* |
A Systems Approach to the Development and Function of C4 Photosynthesis | $8,386,495 | 4 |
1127083 | Parrott, Wayne | University of Georgia University of Missouri-Columbia* University of Minnesota-Twin Cities* University of Nebraska-Lincoln* |
A Genetic Resource for Gene Discovery in Soybean | $3,035,017 | 3 |
1025881 | Pawlowski, Wojiech P. | Cornell University University of Minnesota-Twin Cities* North Dakota State University* National Center for Genome Resources* |
A High-Resolution Map of Recombination in Maize | $4,061,449 | 4 |
1126971 | Purugganan, Michael D. | New York University | Environmental Gene Regulatory Interaction Networks in Rice | $3,628,914 | 4 |
1027527 | Schnable, Patrick S. | Iowa State University Truman State University* |
Functional Structural Diversity among Maize Haplotypes | $3,000,000 | 2 |
1127051 | Smith, Aaron | Louisiana State University & A&M College | Identifying Chromatin-Level Mechanisms that Regulate Responses to Phosphorus- and Iron-deficiencies in Rice | $784,948 | 4 |
1126938 | Stapleton, Ann E. | University of North Carolina-Wilmington The J. Craig Venter Institute* Hiram College* Presbyterian College* |
Plant Host Control and Feedback Responses to Phyllosphere Microbes: Change in Metagenomes and Plant Traits in Response to Environmental Stress | $601,475 | 3 |
1128145 | Sundaresan, Venkatesan | University of California-Davis University of Oklahoma-Norman* |
Genomics of the Zygotic Transition in Rice | $1,748,568 | 3 |
1127027 | Szymanski, Daniel | Purdue University | Novel Quantitative Proteomic Methods to Discover and Localize Endogenous Protein Complexes | $604,999 | 2 |
1126992 | Thelen, Jay | University of Missouri-Columbia | Systems Analysis of Protein Interactome in Cytosol and Nuclei of Developing Soybean and Rapeseed Embryos | $500,000 | 2 |
1025830 | Thompson, William F. | North Carolina State University Cold Spring Harbor Laboratory* University of Texas-Austin/Texas Advanced Computing Center* |
Epigenome Dynamics During DNA Replication | $6,781,582 | 5 |
1127155 | Udvardi, Michael | Samuel Roberts Noble Foundation University of North Texas* Boyce Thompson Institute for Plant Research* University of Delaware* |
Genetic and Cellular Dissection of Mutualistic Plant-Microbe Symbioses in Medicago truncatula | $6,683,108 | 5 |
1127112 | Ware, Doreen | Cold Spring Harbor Laboratory/USDA-ARS Oregon State University* European Molecular Biology Laboratory-European Bioinformatics Institute* New York University School of Medicine* American Society of Plant Biologists* Ontario Institute for Cancer Research |
IPGA: Gramene - Exploring Function through Comparative Genomics and Network Analysis | $10,699,113 | 5 |
1027542 | Wessler, Susan | University of California-Riverside Boyce Thompson Institute for Plant Research* Cornell University* USDA-ARS Dale Bumpers National Rice Research Center* |
Genome-wide Impact of mPing Transposition on Rice Phenotypic Diversity | $4,798,864 | 5 |
1127076 | Wisser, Randall | University of Delaware -Newark Cornell University* North Carolina State University* Iowa State University* |
Genetic and Histological Dissection of Phenotypic Variation in Quantitative Resistance to Maize Diseases | $3,977,771 | 5 |
1126998 | Yandell, Mark | University of Utah Michigan State University* |
IPGA: Developing an Effective, Portable Annotation Engine for Plant Genomes | $1,834,128 | 2 |
* Subawardee
Fiscal Year 2010 Awards |
|||||
Award # | Principal Investigator | Institution | Title | Total Award ($) | Total Duration (Yrs) |
1025954 | Bass, Henry | Florida State University Florida Agricultural and Mechanical University* |
Chromatin Structure and Genome Response in Maize | $1,453,109 | 2 |
0922701 | Brutnell, Thomas | Boyce Thompson Institute Iowa State University* |
Ds Regional Mutagenesis: A Platform for Defining Gene Function in Maize | $ 2,594,947 | 3 |
1032023 | Caicedo, Ana | University of Massachusetts-Amherst Washington University* University of Arkansas/USDA-ARS* |
Genomic Structure and Contemporary Evolution of Weediness in Red Rice | $2,489,274 | 4 |
1025947 | Chen, Z. Jeffrey | University of Texas at Austin Alcorn State University* North Carolina State University* Texas A & M University* The J. Craig Venter Institute* |
Functional and Sequence Analysis of Fiber Development in Allotetraploid Cotton | $3,828,145 | 5 |
0922738 | Coruzzi, Gloria | New York University American Museum Natural History* Cold Spring Harbor Laboratory* New York Botanical Garden* New York University* |
Genomics of Comparative Seed Evolution | $3,750,001 | 4 |
0922703 | Dawe, R. Kelly | University of Georgia University of California-Davis* University of Hawaii-Manoa* University of Missouri-Columbia* University of Wisconsin-Madison* |
Functional Genomics of Maize Centromeres | $5,014,464 | 5 |
0922493 | Della Penna, Dean | Michigan State University Cornell University/USDA-ARS* Michigan State University* Purdue University* |
Elucidating the Genetic Architecture of ProVitamin A and Vitamin E Biosynthesis in Seed | $5,399,384 | 5 |
0922742 | dePamphilis, Claude | Pennsylvania State University University at Buffalo* University of Georgia* University of Florida* |
The Amborella Genome: A Reference for Plant Biology | $7,315,073 | 4 |
1027494 | Goldberg, Robert | University of California-Los Angeles University of California-Davis* |
Gene Regulatory Processes and Networks Required to Make a Soybean Seed | $4,329,666 | 3 |
0923992 | Hahn, Michael | University of Georgia | A Toolkit for in Vivo Visualization/Modulation of Plant Cell Wall Polysaccharides | $4,340,407 | 4 |
0923960 | Hegeman, Adrian | University of Minnesota-Twin Cities | Improving the Quantity and Quality of Plant Metabolomics Information | $1,918,691 | 3 |
1027445 | Jackson, David | Cold Spring Harbor Laboratory The J. Craig Venter Institute* University of Wyoming* |
Maize Cell Genomics: Resources for Visualizing Promoter Activity and Protein Dynamics using Fluorescent Protein Lines | $5,610,211 | 5 |
1027529 | Jansen, Robert | University of Texas at Austin Indiana University* University of Nebraska* |
The Geraniaceae Genomes Project: Accelerated and Coordinated Evolution Across the Three Plant Genomes | $2,420,822 | 4 |
0923312 | Klee, Harry | University of Florida Boyce Thompson Institute/USDA-ARS* |
Functional Genomics of Tomato Fruit Quality: Bridging the Gap between QTLs and Genes | $1,814,409 | 3 |
1025837 | Kwak, June | University of Maryland College Park Colorado State University* Johns Hopkins University* Pennsylvania State University* University of California-San Diego* University of Missouri-Columbia* |
Cell-type Specific Networks in Brassica Guard Cell Responses to Drought | $5,107,775 | 4 |
1032105 | McCombie, W. Richard | Cold Spring Harbor Laboratory | Gene Discovery in the Cereals | $3,499,977 | 2 |
1026555 | McCouch, Susan | Cornell University University of Arkansas/USDA-ARS* |
The Genetic Basis of Transgressive Variation in Rice | $6,985,289 | 4 |
1025840 | Nielsen, Dahlia | North Carolina State University University of California-Davis* |
The Plant-Nematode Interactome: Identifying Cross-Species Gene Networks | $1,557,138 | 3 |
1026003 | Rhee, Seung | Carnegie Institution of Washington | Building a Highly Automated Metabolic Pathway Reconstruction Infrastructure for Plants | $1,821,570 | 4 |
1031416 | Spalding, Edgar | University of Wisconsin-Madison Doane College* University of Florida* |
Advancing Complex Phenotype Analyses through Machine Vision and Computation | $4,064,922 | 4 |
0922095 | Springer, Nathan | University of Minnesota-Twin Cities Cold Spring Harbor Laboratory* |
Maize Epigenomic Variation | $1,678,620 | 3 |
1025752 | Stacey, Gary | University of Missouri-Columbia | Soybean Root Hairs: A Model for Single-Cell Plant Biology | $1,500,000 | 4 |
0923975 | Vallejos, C. Eduardo | University of Florida North Dakota State University* Pennsylvania State University* |
Development of a Gene-Based Ecophysiology Model | $2,385,950 | 4 |
0925071 | Wagner, Doris | University of Pennsylvania Cold Spring Harbor Laboratory* Indiana University* |
RCN: Establishment of an Epigenomics of Plants International Consortium (EPIC) | $634,846 | 5 |
0923752 | Weinig, Cynthia | University of Wyoming Dartmouth College* Kansas State University* University of California-Davis* |
Agroecological Annotation of Gene Function and Computational Analysis of Gene Networks | $5,652,782 | 5 |
1026200 | Wing, Rod | University of Arizona Purdue University* University of Chicago* University of Maryland* |
Oryza Genome Evolution | $9,946,315 | 4 |
0922746 | Wise, Roger | Iowa State University | The Functional Interactome of Cereals with the Fungal Biotroph, Blumeria graminis | $2,764,990 | 4 |
1025890 | Zilberman, Daniel | University of California-Berkeley | Epigenetic Mechanisms Regulating Gene Imprinting In Rice Seeds | $2,106,725 | 3 |
Fiscal Year 2009 Awards | |||||
Award # | Principal Investigator | Institution | Title | Total Award ($) | Total Duration (Yrs) |
0923806 | Bais, Harsh | University of Delaware Delaware State University* University of California-Davis* |
The Effect of the Microbiome on the Rice Transcriptome | $1,938,281 | 3 |
0922560 | Barkan, Alice | University of Oregon
Eugene Cornell University* |
Macromolecular Networks Underlying Chloroplast Biogenesis | $4,021,469 | 4 |
0924023 | Briggs, Steven | University of California-San Diego | Discovery, Revision and Validation of Maize Genes by Proteogenomics | $3,801,162 | 3 |
0820619 | Buckler, Edward | Cornell University North Carolina State University* University of Missouri-Columbia* University of Wisconsin-Madison* |
Genetic Architecture of Maize and Teosinte | $9,820,783 | 4 |
0922391 | Chiang, Vincent | North Carolina State
University University of Wisconsin-Madison* |
Regulation and Modeling of Lignin Biosynthesis | $3,722,841 | 4 |
0922650 | Coleman, Gary | University of Maryland-College
Park Bowie State University* |
An Integrative Study of Nitrogen Cycling and Storage in Poplar | $3,230,632 | 4 |
0923950 | Dooner, Hugo | Rutgers University Montclair State University* |
Facile Production and Efficient Indexing of Transposon-tagged Lines Using Next-generation Sequencing Technology for Maize | $1,242,967 | 3 |
0820612 | Giovannoni, James | Boyce Thompson Institute Colorado State University* University of Oklahoma-Norman* |
Tomato Chromosome 1 and 10 Sequencing, Coordination and Bioinformatics for the International Solanaceae Genome Initiative | $10,407,225 | 4 |
0822258 | Jackson, Scott | Purdue University Cornell University* HudsonAlpha Institute* Iowa State University* University of Maryland-College Park* |
Leveraging Untapped Genetic Diversity in Soybean | $8,947,933 | 5 |
0822201 | Jaiswal, Pankaj | Oregon State University Cornell University* New York Botanical Garden* |
The Plant Ontology | $3,118,202 | 4 |
0922457 | Juenger, Thomas | University of Texas at Austin | The Physiological Genomics of Panicum: Exploring Switchgrass Responses to Climate Change | $4,562,447 | 4 |
0822100 | Kianian, Shahryar | North Dakota State
University Oregon State University* University of California-Davis* |
Construction of High Resolution Physical Maps for Large Plant Genomes | $3,108,251 | 3 |
0923880 | Larkins, Brian | University of Arizona Central Michigan University* New College of Florida* University of Utah* |
Regulation of Early Endosperm Development in Maize | $4,931,804 | 5 |
0922545 | Ming, Ray | University of Illinois at
Urbana-Champaign Hawaii Agricultural Research Center* Miami University* Texas A&M Research Foundation* |
The Origin and Evolution of Y Chromosomes in Caricaceae | $3,141,354 | 4 |
0922747 | Pereira, Andy | Virginia Polytechnic Institute and
State University Louisiana State University Agricultural Center* Pennsylvania State University* |
Cereal Drought Stress Response and Resistance Networks | $2,400,000 | 3 |
0922418 | Ralph, Steven | University of North Dakota North Dakota State University* University of Florida* |
Genomic Approaches to Identify Insect Resistance Genes in Poplar Trees | $677,356 | 3 |
0820451 | Rieseberg, Loren | Indiana University Cal Poly Pomona Foundation Inc* University of California-Davis* University of Georgia Research Foundation Inc* University of Massachusetts-Boston* |
Comparative Genomics of Phenotypic Variation in the Compositae | $8,092,370 | 4 |
0820854 | Sinha, Neelima | University of California, Davis | Elucidating Gene Networks Regulating Development in Tomato | $5,277,364 | 5 |
0922661 | Van der Knaap, Esther | Ohio State University Boyce Thompson Institute* College of Wooster* |
Discovery of Genes and Networks Regulating Tomato Fruit Morphology | $3,782,207 | 4 |
0922447 | Van Nocker, Steven | Michigan State University | Exploiting Chromatin Landmarks to Characterize Complex Plant Genomes | $984,344 | 3 |
0923827 | Voytas, Daniel | University of Minnesota-Twin
Cities Iowa State University* Massachusetts General Hospital* |
Precise Engineering of Plant Genomes using Zinc Finger Nucleases | $3,349,701 | 4 |
0817707 | Wendel, Jonathan | Iowa State University Brigham Young University* University of Georgia Research Foundation Inc* |
Comparative Evolutionary Genomics of Cotton | $4,985,269 | 5 |
0822284 | Wing, Rod | University of Arizona | Generation and Analysis of a Reference Sequence for the West African Cultivated Rice - Oryza glaberrima (CG14) | $1,477,785 | 2 |
0910642 | Wilson, Richard | Washington University School of Medicine | Improving the Sequence of the Maize Genome | $1,538,919 | 1 |
0820005 | Young, Nevin | University of Minnesota-Twin
Cities Boyce Thompson Institute* Hamline University* National Center for Genome Resources* |
A Medicago truncatula HapMap as a Platform for Exploring the Genetics of Legume Symbioses | $5,689,397 | 3 |
Fiscal Year 2009 Heterosis Challenge Grants (HCG) | |||||
Award # | Principal Investigator | Institution | Title | Total Award ($) | Total Duration (Yrs) |
0924025 | Comai, Luca | University of California-Davis | The Regulatory Disruption Hypothesis for Heterosis | $499,408 | 3 |
0922604 | Deng, Xing Wang | Yale University | Epigenetic Landscapes and Transcriptomes in Two Maize Inbred Lines and Their Heterotic Hybrids | $500,000 | 2 |
0923981 | Hollick, Jay | University of California-Berkeley | Epihybridity in Zea mays | $499,364 | 3 |
0922512 | Hudson, Matthew | University of Illinois at Urbana-Champaign | Exploring the Role of Noncoding RNAs in Heterosis | $499,979 | 3 |
0922526 | Li, Lei | University of Virginia | Role of microRNA-related Polymorphisms in Regulating Heterotic Gene Expression | $498,858 | 3 |
0922442 | Lippman, Zachary | Cold Spring Harbor Laboratory | Identification and Characterization of Single Gene Mutations Causing Heterosis in Tomato | $499,075 | 3 |
0922769 | Newton, Kathleen | University of Missouri-Columbia | Proteins Altered in Maize Hybrids Exhibiting Different Levels of Heterosis | $499,978 | 3 |
Fiscal Year 2008 Awards | |||||
Award # | Principal Investigator | Institution | Title | Total Award ($) | Total Duration (Yrs) |
0820624 | Benfey, Philip | Duke University Pennsylvania State University* Georgia Tech Research Corporation* Boyce Thompson Institute* North Carolina Central University* |
Genome-Wide Analysis of Root Traits | $4,298,963 | 4 |
0820730 | Carter, Clay | University of
Minnesota-Duluth Iowa State University* |
Functional Genomics of Nectar Production in Brassicaceae | $1,336,289 | 4 |
0822383 | Comai, Luca | University of
California-Davis Fred Hutchinson Cancer Research Center* |
Efficient Identification of Induced Mutations in Crop Species by Ultra-High Throughput DNA Sequencing | $1,966,061 | 2 |
0741876 | Cramer, Grant | University of Nevada-Reno | RCN: An International Research and Educational Collaboration For Grape Functional Genomics | $509,420 | 5 |
0701916 | Dvorak, Jan | University of
California-Davis Cold Spring Harbor Laboratory* Kansas State University* |
Physical Mapping of the Wheat D Genome | $6,799,974 | 3 |
0820346 | Gang, David | University of Arizona University of Missouri-Columbia* |
Rhizomics - Comparative Functional Genomic and Proteomic Analysis of Rhizome Specificity Across the Plant Kingdom | $4,338,231 | 4 |
0820659 | Hannapel, David | Iowa State University Case Western Reserve University* University of California-Davis* |
Transferring Research from a Model System to Uncover the Network that Regulates Long-Distance Signaling in Potato | $2,754,729 | 4 |
0822495 | Johal, Gurmukh | Purdue University North Carolina State University* |
Mutant-Assisted Exploration of Natural Variation Underlying R Gene-Mediated Immunity in Maize | $3,963,897 | 5 |
0820580 | Kliebenstein, Daniel | University of California-Davis | The Generation of Complex Epistasis by Metabolic Networks | $1,314,084 | 4 |
0820828 | Lisch, Damon | University of California-Berkeley | Epigenetic Regulation of Mutator Transposons in Maize | $1,370,086 | 4 |
0820668 | Mackenzie, Sally | University of Nebraska-Lincoln | An Integrative Study of Plant Mitochondrial Biology | $1,420,753 | 3 |
0820729 | McSteen, Paula | Pennsylvania State
University California State University-Long Beach* University of California-San Diego* |
Genetic and Genomic Approaches to Understanding the Role of Auxin in Shoot Development | $4,753,764 | 5 |
0820367 | Musser, Richard | Western Illinois University | RUI: Deciphering Plant-Herbivore Interactions | $350,000 | 3 |
0820846 | Nuzhdin, Sergey | University of Southern
California University of California-Davis* |
Community Genomics of Local Adaptation in Medicago truncatula | $3,197,563 | 3 |
0820769 | Parrott, Wayne | University of Georgia Research
Foundation Inc University of Minnesota-Twin Cities* University of Missouri-Columbia* University of Nebraska-Lincoln* |
Determining Gene Function in Soybean: Resources for Translation of Genomics Information into Tools | $2,555,757 | 3 |
0820610 | Scanlon, Michael | Cornell University Cold Spring Harbor Laboratory* Iowa State University* Kansas State University* Truman State University* University of Minnesota-Twin Cities* |
Genomic Analyses of Shoot Meristem Function in Maize | $5,217,817 | 4 |
0821954 | Taylor, Christopher | Donald Danforth Plant Science
Center University of Florida* |
Functional Genomics of Transfer Cells | $1,986,692 | 3 |
0821966 | Town, Christopher | J. Craig Venter
Institute University of Wisconsin-Madison* |
After the Sequencing: Curating the Medicago truncatula Genome | $3,759,830 | 5 |
0820831 | White, Frank | Kansas State University Iowa State University* |
Transcription Profiling and Functional Analyses of Bacterial Disease Susceptibility Pathways of Rice | $3,301,127 | 4 |
0820642 | Whitham, Steven | Iowa State University University of Missouri-Columbia* |
High-Throughput Functional Analysis of Soybean Defense Pathways by Virus-Induced Gene Silencing | $2,112,160 | 4 |
Fiscal Year 2007 Awards | |||||
Award # | Principal Investigator | Institution | Title | Total Award ($) | Total Duration (Yrs) |
0605200 | Bedinger, Patricia | Colorado State
University University of Missouri-Columbia* University of California-Davis* Cornell University* Ohio State University* |
Using Genomic Tools to Identify Interspecific Reproductive Barriers in the Tomato Clade | $3,904,788 | 4 |
0701297 | Birchler, James | University of Missouri-Columbia | Maize Artificial Chromosomes | $1,902,766 | 5 |
0701919 | Browse, John | Washington State
University Donald Danforth Plant Science Center* Michigan State University* SUNY Stony Brook* Montana State University* |
Biochemical Genomics: Quizzing the Chemical Factories of Oilseeds | $4,574,645 | 4 |
0701757 | Buerkle, C. Alex | University of Wyoming | Analytical Tools for Studies of the Genomics of Isolation between Plant Taxa | $399,432 | 3 |
0701731 | Evans, Matthew | Carnegie Institute of Washington
(CA) South Dakota State University* Oregon State University* Iowa State University* |
Functional Genomics of Maize Gametophytes | $4,745,983 | 5 |
0701488 | Folta, Kevin | University of Florida University of New Hampshire* |
Identification and Functional Characterization of Novel Expressed Transcripts in the Rosaceae | $1,005,853 | 3 |
0701871 | Freeling, Michael | University of California-Berkeley | Computing Regulatory DNA by Comparing Plant Genomes | $1,965,052 | 5 |
0605659 | Giovannoni, James | Boyce Thompson Institute for Plant
Research Colorado State University* Cornell University* |
U.S. Contribution to the International Solanaceae Genome Effort | $1,800,000 | 2 |
0701405 | Grotewold, Erich | Ohio State University University of Toledo* |
The Grass Regulome Initiative: Integrating Control of Gene Expression and Agronomic Traits Across the Grasses | $2,479,632 | 3 |
0703470 | Kantety, Ramesh | Alabama A&M University Auburn University* J. Craig Venter Institute* University of Oklahoma-Norman* |
Genomic Resources for the Study of Cotton-Reniform Nematode Interactions | $1,047,574 | 3 |
0703273 | McCarty, Donald | University of Florida Cold Spring Harbor Laboratory* Iowa State University* |
Construction of Comprehensive Sequence Indexed Transposon Resources for Maize | $3,703,558 | 4 |
0701745 | Meyers, Blake | University of Delaware University of California-Los Angeles* Ohio State University* |
Understanding the Rice Epigenome: From Genes to Genomes | $5,313,292 | 4 |
0701736 | Nelson, Timothy | Yale University Boyce Thompson Institute* Cornell University* Iowa State University* |
Comparative Analysis of C3 and C4 Leaf Development in Rice, Sorghum and Maize | $5,475,678 | 4 |
0701911 | Olson, Matthew | University of Alaska
Fairbanks University of Minnesota-Twin Cities* |
Population Genomics of Cold Adaptation in Poplar | $1,687,757 | 4 |
0702454 | Pawlowski, Wojciech | Cornell University | Natural Variation in Meiotic Recombination in Maize | $404,686 | 2 |
0701382 | Purugganan, Michael | New York University Cornell University* Purdue University* Washington University* |
The Evolutionary Genomics of Rice Domestication | $4,402,973 | 4 |
0649614 | Quackenbush, John | Dana-Farber Cancer Institute | Reconstruction and Annotation of Transcribed Sequences in Plants | $2,566,000 | 4 |
0701119 | Salt, David | Purdue University Dartmouth University* Texas A&M Research Foundation* |
Ionome to the Genome: Mapping the Gene Networks Controlling Nutrient Content in Rice Grain | $5,323,284 | 4 |
0621702 | Spalding, Edgar | University of Wisconsin-Madison | Machine Vision-Based Quantification of Plant Growth and Development | $1,110,004 | 2 |
0703908 | Stein, Lincoln | Cold Spring Harbor
Laboratory Cornell University* |
Gramene: A Platform for Comparative Plant Genomics | $6,944,880 | 4 |
0701846 | Sussman, Michael | University of Wisconsin-Madison | An Interdisciplinary Approach to Deciphering the Molecular Dialogue between the Plasma Membrane and Cytoplasm of Medicago truncatula | $2,462,216 | 3 |
0701709 | Thomashow, Michael | Michigan State University Oregon State University* |
Low Temperature Transcriptional Networks | $4,738,001 | 5 |
0703285 | Udvardi, Michael | Samuel Roberts Noble Foundation | Development of Genetic Resources to Dissect Gene Regulatory Networks Governing Nodule Development and Differentiation in Medicago truncatula | $3,831,732 | 4 |
0703905 | Vidal, Marc | Dana-Farber Cancer Institute The Salk Institute for Biological Studies* |
A Plant Interactome Network Map | $7,971,396 | 4 |
0701880 | Walbot, Virginia | Stanford University University of California-Berkeley* |
Cell Fate Acquisition in Maize | $4,577,530 | 5 |
0701748 | Westwood, James | Virginia Polytechnic Institute and
State University Pennsylvania State University* University of California-Davis* University of Virginia* |
The Parasitic Plant Genome Project | $1,528,815 | 3 |
Fiscal Year 2006 Awards | |||||
Award # | Principal Investigator | Institution | Title | Total Award ($) | Total Duration (Yrs) |
0606873 | Benfey, Philip | Duke University | Genomic Approaches to Identify Genes for Root System Architecture Traits | $749,862 | 2 |
0606909 | Brendel, Volker | Iowa State University University of South Dakota* |
Cyberinfrastructure for (Comparative) Plant Genome Research Through PlantGDB | $3,469,595 | 4 |
0834044 (0604907) |
Buell, C. Robin | Michigan State
University Institute for Genomic Research^ Washington State University* |
Generation of Potato Sequence and Annotation Resources | $3,021,461 | 3 |
0606666 | Cohen, Jerry D. | University of Minnesota-Twin Cities | Global Measurement of Turnover of Plant Proteins | $621,222 | 2 |
0605059 | Collmer, Alan | Cornell University Boyce Thompson Institute* |
Exploiting Tomato Genomics Resources to Investigate Basal Plant Defenses Against Pathogens | $2,500,000 | 4 |
0605251 | Cook, Douglas R. | University of California-Davis | Comparative Genomics of Legume Disease Resistance Gene Homologs | $4,959,892 | 4 |
0605017 | Dean, Ralph A. | North Carolina State
University Texas A&M Research Foundation* University of Arkansas* |
A High-Throughput Protoplast System for Rice Functional Genomics and Proteomics: Protein-Protein Interactions at the Host-Pathogen Interface | $2,345,271 | 3 |
0605033 | Dixon, Richard | Samuel Roberts Noble
Foundation University of Minnesota-Twin Cities* |
A Genomics Approach to the Synthesis and Secretion of Bioactive Plant Natural Proteins | $1,406,599 | 3 |
0604755 | Fennell, Anne | South Dakota State
University University of Nevada-Reno* Boston University* Iowa State University* |
Functional Genomics of Bud Endodormancy Induction in Grapevines (Vitis) | $3,003,610 | 4 |
0604923 | Quail, Peter Hake, Sarah^ |
University of
California-Berkeley Cold Spring Harbor Laboratory* University of Missouri-Saint Louis* University of Illinois at Urbana-Champaign* University of California-San Diego* |
Genetic Mechanisms Regulating Inflorescence Architecture in Maize and Other Cereals | $5,921,712 | 5 |
0603927 | Jiang, Jiming | University of
Wisconsin-Madison University of Arizona* Purdue University* |
Comparative Genomics of a Rice Centromere | $3,683,377 | 5 |
0604336 | Last, Robert L. | Michigan State
University University of Arizona* University of Michigan* |
Building and Operating a Chemical Factory in Solanum Species | $3,696,295 | 3 |
0605736 | McClung, C. Robertson | Dartmouth College University of Wisconsin-Madison* University of Minnesota-Twin Cities* |
Genetic Analysis of Natural Variation in the Control of Flowering Timing and Inflorescence Architecture in Brassica rapa | $3,079,595 | 4 |
0608405 | McCombie, W. Richard | Cold Spring Harbor
Laboratory University of Delaware* |
Characterization of Rice Genomes and Transcriptomes Using Novel Sequencing Technologies | $3,021,987 | 3 |
0606461 | McCouch, Susan R. | Cornell University University of Arizona* Texas A&M Research Foundation* |
Exploring the Genetic Basis of Transgressive Variation in Rice | $5,481,557 | 4 |
0605240 | Mockler, Todd C. | Oregon State University The Salk Institute for Biological Studies* The Scripps Research Institute* |
Comparative Genomic Analysis of Diurnal and Circadian Gene Expression Regulation | $1,425,485 | 3 |
0605016 | Okita, Thomas W. | Washington State University | An Integrated Genomic, Proteomic and Cytological Approach to Understand the Function of Cytoplasmic Localized, Cytoskeletal-Associated RNA-Binding Proteins in Rice | $2,185,775 | 5 |
0606595 | Rose, Jocelyn K. | Cornell University | Characterization of the Tomato Secretome Using Integrated Functional and Computational Strategies | $3,627,035 | 5 |
0605135 | Sederoff, Ronald | North Carolina State
University Clemson University* American Chestnut Foundation* |
Genomic Tool Development for the Fagaceae | $2,732,025 | 4 |
0606607 | Settles, A. Mark | University of Florida | Dosage Dependent Genes Affecting Seed Composition and Weight | $1,227,302 | 4 |
0604439 | Thelen, Jay J. | University of Missouri-Columbia | Identification and Absolute Quantitation of Protein Phosphorylation Networks in Oilseeds | $1,999,479 | 5 |
0604765 | Weil, Clifford F. | Purdue University | The Maize TILLING Project: Reverse Genetics of Maize Point Mutations | $1,617,351 | 2 |
0607123 | Wessler, Susan R. | University of Georgia Research
Foundation Inc Michigan State University* Purdue University* |
Maize Transposable Elements: Discovery, Description and Functional Characterization | $4,108,008 | 5 |
0604966 | Young, Nevin D. | University of Minnesota-Twin
Cities University of Oklahoma* Institute for Genomic Research* |
Completing the Sequence of Medicago truncatula Gene-Rich Euchromatin | $6,590,671 | 2 |
Maize Genome Sequencing Project (NSF/DOE/USDA Joint Program) | |||||
Award # | Principal Investigator | Institution | Title | Total Award ($) | Total Duration (Yrs) |
0527192 | Wilson, Richard | Washington University Cold Spring Harbor Laboratory* Iowa State University* University of Arizona* |
Sequencing the Maize Genome | $29,450,001 | 3 |
Fiscal Year 2005 Awards | |||||
Award # | Principal Investigator | Institution | Title | Total Award ($) | Total Duration (Yrs) |
0501758 | Barbazuk, W. Brad | Donald Danforth Plant Science
Center Washington University* |
Ab Initio Gene Finding in Maize | $622,027 | 2 |
0501814 | Bennetzen, Jeffrey | University of Georgia Research
Foundation Inc Purdue University* |
Characterizing the Wheat Genome by Random Sample Sequencing | $1,471,641 | 3 |
0501713 | Brutnell, Thomas | Boyce Thompson Institute Iowa State University* |
A Two Component Activator/Discussion Platform for Reverse and Forward Genetic Analysis in Maize | $3,779,502 | 5 |
0733857 (0501712) |
Comai, Luca | University of
California-Davis University of Washington^ Purdue University* University of Puget Sound* Cold Spring Harbor Laboratory* Texas A&M Research Foundation* California Polytechnic State University* University of Missouri-Columbia* |
Functional Genomics of Plant Polyploids | $7,766,348 | 5 |
0501914 | Galbraith, David | University of Arizona | Self-Assembling Autofluorescent Protein Microarrays, A Universal Resource for the Plant Research Community | $1,674,010 | 5 |
0501720 | Goldberg, Robert | University of California-Los
Angeles University of California-Davis* University of Minnesota-Twin Cities* |
Genes Required to Make a Soybean Seed | $7,571,004 | 5 |
0501862 | Jackson, David | Cold Spring Harbor
Laboratory Institute for Genomic Research* University of Wyoming* |
Characterizing Sub-Cellular Compartments in Maize Using Fluorescent Protein Tagged Lines | $4,950,172 | 5 |
0501877 | Jackson, Scott | Purdue University Iowa State University* National Center for Genome Resources* University of Arizona* University of Missouri-Columbia* |
SoyMap: An Integrated Soybean Genome Map | $4,496,047 | 4 |
0501824 | Jorgensen, Richard | University of Arizona University of Georgia Research Foundation Inc* |
Functional Genomics by Sense-RNAi: A Forward Genetic Approach for Cell-Type-Targeted Mutagenesis and for Polyploids | $1,641,880 | 3 |
0501778 | Klee, Harry | University of Florida Boyce Thompson Institute* Virginia Polytechnic Institute and State University* |
Functional Genomic Analysis of Fruit Flavor and Nutrition Pathways | $2,019,969 | 4 |
0501763 | Langley, Charles | University of
California-Davis North Carolina State University* Texas A&M Research Foundation* University of Florida* |
Association Genetics of Natural Genetic Variation and Complex Traits in Pine | $5,902,886 | 4 |
0501890 | Luthe, Dawn | Mississippi State
University Pennsylvania State University* University of Alabama at Birmingham* |
Functional Genomics of Woody Perennial Flowering | $1,753,316 | 3 |
0501700 | Moose, Stephen | University of Illinois at
Urbana-Champaign Cornell University* |
Gene Discovery for Maize Responses to Nitrogen | $2,606,096 | 5 |
0501818 | Schwartz, David | University of
Wisconsin-Madison University of Southern California* |
A Genome-Wide Optical Map for Maize | $983,908 | 2 |
0836433 (0421756) |
Tsai, Chung-Jui | University of Georgia Research
Foundation Inc Michigan Technological University^ |
A Functional Genomics Approach to Investigate Regulation of Phenolic Glycoside Metabolism in Populus | $2,114,095 | 4 |
0501760 | Bowman, Lewis Vance, Vicki^ |
University of South Carolina
Research Foundation University of South Carolina at Columbia* University of California-Davis* |
Small RNAs in Rice and Maize | $1,203,620 | 3 |
0501678 | Voytas, Daniel | Iowa State University | A Homologous Recombination System for Plants Based on Zinc Finger Nucleases | $1,931,010 | 4 |
0500461 | Wise, Roger | Iowa State University | Functional Genomics of Plant Disease Defense Pathways | $2,093,192 | 4 |
0501857 | Yu, Yeisoo | University of Arizona Stanford University* |
Maize Full-Length cDNA Project | $4,658,148 | 3 |
Fiscal Year 2004 Awards | |||||
Award # | Principal Investigator | Institution | Title | Total Award ($) | Total Duration (Yrs) |
0421799 | Barkan, Alice | University of Oregon
Eugene Cornell University* |
Plant RNA Binding Proteins: Tools for Functional Genomics and Application to Chloroplast Biogenesis | $4,167,531 | 5 |
0423898 | Birchler, James | University of Missouri-Columbia | Somatic Karyotype Analysis of the Maize Genome | $2,257,237 | 5 |
0624077 (0421815) |
Chen, Z. Jeffrey | University of Texas at
Austin Texas A&M Research Foundation^ University of New Orleans* Texas A&M Research Foundation* Mississippi State University* |
Genetic and Functional Genomic Analysis of Early Events in Cotton Fiber Development | $2,541,123 | 5 |
0421619 | Galen, Candace Cone, Karen^ |
University of
Missouri-Columbia University of Arizona* University of Georgia Research Foundation Inc* University of Minnesota-Twin Cities* University of Wisconsin-Madison* Washington University* |
Functional Genomics of Maize Chromatin | $6,644,647 | 5 |
0421604 | Coruzzi, Gloria | New York University American Museum of Natural History* Cold Spring Harbor Laboratory* New York Botanical Garden* |
Genomics of Comparative Seed Evolution | $4,994,588 | 5 |
0421671 | Dawe, R. Kelly | University of Georgia Research
Foundation Inc University of Hawaii* University of Missouri-Columbia* University of Wisconsin-Madison* |
Functional Genomics of Maize Centromeres | $5,602,932 | 5 |
0421675 | Deng, Xing-Wang | Yale University University of California-Davis* |
Virtual Center for Analysis of Rice Genome Transcription | $2,409,693 | 3 |
0321494 | Dooner, Hugo | Rutgers University New Brunswick | A Set of Transgenic Maize Lines for Localized Mutagenesis Based on the Ac-Ds Transposon System | $1,035,558 | 4 |
0421676 | Gantt, James | University of Minnesota-Twin
Cities Boyce Thompson Institute* |
Use of Interfering RNAs to Identify Gene Function in Medicago truncatula | $2,098,510 | 4 |
0421683 | Hahn, Michael | University of Georgia Research Foundation Inc | A Monoclonal Antibody Toolkit for Functional Genomics of Plant Cell Walls | $3,876,004 | 4 |
0436450 (0321450) |
Harper, Jeffrey | University of Nevada Reno The Scripps Research Institute^ |
Prediction and Validation of Phospho-Regulatory Sites in Crop Plant Proteomes | $691,501 | 2 |
0419435 | Kochian, Leon | Boyce Thompson Institute Cornell University* |
Functional and Comparative Genomic Analysis of Aluminum Tolerance in Maize | $933,490 | 5 |
0420394 | McNellis, Timothy | Pennsylvania State University | Rootstock-Dependent Gene Expression in Apple Tree Scions | $2,269,246 | 5 |
0553417 (0421803) |
Ming, Ray | University of Illinois at
Urbana-Champaign Hawaii Agricultural Research Center^ University of Georgia Research Foundation Inc* University of Wisconsin-Madison* |
Comparative Genomics of Papaya Chromosomes | $2,896,907 | 4 |
0421679 | Napoli, Carolyn | University of Arizona | ChromDB: Integrating Information about Plant Chromatin Proteins and Complexes | $1,596,540 | 4 |
0421717 | Peterson, Daniel | Mississippi State
University Clemson University* Texas Agricultural Experiment Station* |
Accelerating Pine Genomics Through Development and Utilization of Molecular and Cytogenetic Resources | $1,613,915 | 3 |
0421630 | Rieseberg, Loren | Indiana University Cal Poly Pomona Foundation Inc* University of California-Davis* University of Georgia Research Foundation Inc* University of Massachusetts Boston* |
Comparative Genomics of the Compositae | $5,484,985 | 3 |
0421620 | Stacey, Gary | University of
Missouri-Columbia Donald Danforth Plant Science Center* University of Illinois at Urbana-Champaign* |
Functional Genomics of Root Hair Infection | $2,500,005 | 5 |
0321685 | Stein, Lincoln | Cold Spring Harbor
University Cornell University* |
Gramene: A Platform for Comparative Cereal Genomics | $5,500,235 | 4 |
0421634 | Tanksley, Steven | Cornell University Boyce Thompson Institute* Colorado State University* |
Sequence and Annotation of the Euchromatin of Tomato | $4,210,323 | 3 |
0421651 | Thompson, William | North Carolina State
University Clemson University* Cold Spring Harbor Laboratory* |
Global Analysis of Functional Units in Plant Chromosomes: DNA Replication, Domain Structure and Transcription | $5,133,285 | 5 |
0421743 | Tuskan, Gerald | University of Tennessee Institute of
Agriculture University of California-Berkeley* University of Minnesota-Twin Cities* |
The Populus Genome Portal | $1,384,814 | 2 |
Fiscal Year 2003 Awards | |||||
Award # | Principal Investigator | Institution | Title | Total Award ($) | Total Duration (Yrs) |
0321639 | Bass, Henry | Florida State University | Cytogenic Map of Maize | $1,548,982 | 4 |
0321600 | Brendel, Volker | Iowa State University University of South Dakota* |
PlantGDB - Plant Genome Database and Analysis Tools | $978,683 | 2 |
0834043 (0321538) |
Buell, C. Robin | Michigan State
University Institute for Genomic Research^ |
An Annotation Resource for the Rice Genome | $4,876,855 | 4 |
0653676 (0332411) |
Burke, John | University of Georgia Research
Foundation Inc Vanderbilt University^ |
YIA-PGR: Identification of the Targets of Selection During Sunflower Domestication | $1,111,827 | 5 |
0321663 | Chandler, Vicki | University of Arizona Institute for Genomic Research* University of Wisconsin-Madison* |
Microarray Resources for Maize Research | $3,658,458 | 3 |
0321756 | Close, Timothy | University of
California-Riverside University of California-Davis* |
Coupling Expressed Sequences and Bacterial Artificial Chromosome Resources to Access the Barley Genome | $2,433,127 | 4 |
0321467 | Doebley, John | University of
Wisconsin-Madison Cornell University* University of California-Irvine* North Carolina State University* Cold Spring Harbor Laboratory* University of Missouri-Columbia* |
Molecular and Functional Diversity in the Maize Genome | $10,261,784 | 5 |
0320683 | Dooner, Hugo | Rutgers University New
Brunswick University of California-Irvine* |
A Comparative Genomics Investigation of Unprecedented Haplotype Variability in Maize | $973,067 | 4 |
0321757 | Dvorak, Jan | University of
California-Davis Montana State University* Kansas State University* University of California-Riverside* University of Minnesota-Twin Cities* |
Haplotype Polymorphism in the Polyploid Wheats and their Diploid Ancestors | $5,615,748 | 3 |
0321726 | Freeling, Michael | University of California-Berkeley | Epigenetic Regulation of the Mutator System of Transposons | $986,783 | 5 |
0321510 | Henikoff, Steven | Fred Hutchinson Cancer Research
Center University of Washington* Purdue University* |
Targeting Induced Local Lesions IN Genomes (TILLING) for Plant Functional Genomics | $2,570,388 | 3 |
0321664 | Innes, Roger | Indiana University University of Minnesota-Twin Cities* Cornell University* Virginia Museum of Natural History* Virginia Polytechnic and State University* University of Oklahoma Norman Campus* Wonderlab Museum of Science, Health and Technology* |
Comparative Analysis of Legume Genome Evolution | $2,581,746 | 3 |
0321462 | Kianian, Shahryar | North Dakota State
University Oregon State University* University of Arizona* Kansas State University* University of California-Davis* |
Development of Diploid Wheat (Triticum monococcum) Deletion Lines for Reverse Genetics | $1,808,502 | 2 |
0321578 | Klein, Patricia | Texas A&M Research Foundation | Map-Based Dissection of Sorghum Drought Tolerance Gene Networks | $1,964,299 | 4 |
0321701 | Korban, Schuyler | University of Illinois at
Urbana-Champaign Cornell University* Purdue University* Washington University* |
Apple Functional Genomics | $1,659,708 | 2 |
0320544 | Abbott, Albert Main, Doreen^ |
Clemson University | The Prunus Genome Database: A Model For Rosaceae | $646,677 | 3 |
0321683 | McCombie, W. Richard | Cold Spring Harbor
Laboratory University of Arizona* |
Finishing the Rice Genome | $4,202,799 | 3 |
0321437 | Meyers, Blake | University of Delaware Ohio State University Research Foundation* |
Deep Transcription Profiling of Rice Using Signature Sequencing | $4,195,915 | 4 |
0325821 | Nelson, Timothy | Yale University | Analysis of Rice Cellular Expression Profiles | $4,492,329 | 4 |
0319553 | Gibson, Gregory Purugganan, Michael^ |
North Carolina State
University Cornell University* |
Evolutionary Genomics of Rice | $2,573,939 | 3 |
0313887 | Ronald, Pamela | University of
California-Davis Institute for Genomic Research* Iowa State University* |
A Rice Oligonucleotide Array | $4,367,659 | 3 |
0638770 (0321595) |
Scanlon, Michael | Cornell University University of Georgia Research Foundation Inc^ Truman State University* Iowa State University* Cold Spring Harbor Laboratory* |
Functional Analysis of Genes Involved in Meristem Organization and Leaf Initiation | $3,939,129 | 4 |
0321711 | Schnable, Patrick | Iowa State University Truman State University* |
High-Density Genetic Map of Maize Transcripts | $3,691,269 | 3 |
0321565 | Sheridan, William | University of North Dakota | Global Analysis of the Maize Genome: Relating Genes and DNA Sequence to Chromosome Regions | $300,000 | 3 |
0321690 | Shintani, David | University of Nevada Reno | The Functional Identification of Plant Rubber Biosynthetic Genes | $1,992,203 | 4 |
0321724 | Soderlund, Carol | University of Arizona Purdue University* |
Techniques for Efficient Finishing and Physical Linkage of Gene Enriched Shotgun Sequences | $1,414,729 | 2 |
0321666 | Stein, Lincoln | Cold Spring Harbor
Laboratory Cornell University* University of Missouri-Saint Louis* |
The Plant Ontology Consortium | $1,672,411 | 3 |
0332418 | Thelen, Jay | University of Missouri-Columbia | YIA-PGR: Proteomics of Seed-Filling in Oil Seeds | $1,074,667 | 5 |
0333074 | Ware, Doreen | Cold Spring Harbor Laboratory | YIA-PGR: Genomics of Rice, Sorghum and Maize | $1,295,238 | 5 |
0321678 | Wing, Rod | University of Arizona Cold Spring Harbor Laboratory* Purdue University* |
Oryza Map Alignment Project | $9,743,546 | 4 |
0321460 | Young, Nevin | University of Minnesota-Twin
Cities University of Oklahoma Norman Campus* Institute for Genomic Research* |
Sequencing of the Gene Space of the Model Legume, Medicago truncatula | $10,886,431 | 3 |
Fiscal Year 2002 Awards | |||||
Award # | Principal Investigator | Institution | Title | Total Award ($) | Total Duration (Yrs) |
0217651 | Allison, David | University of Alabama at
Birmingham University of Missouri-Rolla* |
Design & Analysis of Microarray Gene Expression Studies in Plants: Toward Sound Statistical Procedures | $2,220,275 | 4 |
0218166 | Baker, Barbara | University of
California-Berkeley Cornell University* Institute of Genomic Research* University of Minnesota-Twin Cities* University of Wisconsin-Madison* |
Potato Functional Genomics: Application to Analysis of Growth, Development, Metabolism and Responses to Biotic and Abiotic Stress | $7,778,910 | 5 |
0543503 (0217594) |
Cairney, John | Georgia Tech Research
Corporation Institute for Genomic Research* |
Genomics of Loblolly Pine Embryogenesis | $1,380,910 | 3 |
0217552 | Carpita, Nicholas | Purdue University University of Connecticut* University of Florida* University of Wisconsin-Madison* |
Identification and Characterization of Cell Wall Mutants in Maize and Arabidopsis using Novel Spectroscopies | $5,921,989 | 4 |
0217653 | Cramer, Grant | University of Nevada
Reno Virginia Polytechnic and State University* |
Integrative Functional Genomic Resource Development in Vitis vinifera: Abiotic Stress and Wine Quality | $3,609,951 | 4 |
0211807 | Dean, Jeffrey | University of Georgia Research Foundation Inc | Transcriptome Responses to Environmental Conditions in Loblolly Pine Roots | $1,651,752 | 3 |
0211872 | Dinesh-Kumar, Savithramma | Yale University | Functional Genomics of Host-Virus Interactions | $3,363,177 | 4 |
0211547 | Dooner, Hugo | Rutgers University New Brunswick | A Set of Maize Transgenic Lines for Localized Mutagenesis Based on the Ac-Ds Transposon System | $140,612 | 1 |
0217312 | Fromm, Michael | University of
Nebraska-Lincoln University of Arizona* University of California-Davis* University of California-San Diego* University of Florida* |
A Protein Interaction Database for Rice Protein Kinases | $6,047,772 | 4 |
0211857 | Galbraith, David | University of Arizona University of California-Riverside* |
Technology Development: Novel Techniques for Discovery of Patterns of Gene Regulation within Complex Eukaryotic Tissues | $625,227 | 2 |
0211732 | Henikoff, Steven | Fred Hutchinson Cancer Research Center | Targeting Induced Local Lesions IN Genomes (TILLING) for Plant Functional Genomics | $568,551 | 1 |
0211659 | Kamoun, Sophien | Ohio State University Research
Foundation National Center for Genome Resources* |
Functional Genomics of Phytophthora-Plant Interactions | $1,891,617 | 4 |
0211797 | Keegstra, Kenneth | Michigan State
University University of California-Riverside* |
Functional Genomics of Hemicellulose Biosynthesis | $4,945,077 | 5 |
0211875 | Klee, Harry | University of Florida Boyce Thompson Institute* |
Functional Genomic Analysis of Fruit Flavor and Nutrition Pathways | $1,159,280 | 3 |
0211742 | McCormick, Sheila | University of California-Berkeley | Functional Analyses of Plant Gamete Gene Expression | $1,135,486 | 4 |
0211851 | Messing, Joachim | Rutgers University New
Brunswick University of Arizona* |
Sequencing the Maize Genome | $4,293,099 | 2 |
0211923 | Michelmore, Richard | University of
California-Davis University of Chicago* |
Comparative Analysis of Resistance Gene Evolution | $3,031,729 | 5 |
0211842 | Nguyen, Henry | University of
Missouri-Columbia Donald Danforth Plant Science Center* University of Illinois at Urbana-Champaign* |
Functional Genomics of Root Growth and Root Signaling Under Drought | $4,549,050 | 4 |
0221536 | Schubert, Karel | Donald Danforth Plant Science
Center Institute for Genomic Research* |
Consortium for Maize Genomics | $5,928,755 | 2 |
0211924 | Sundaresan, Venkatesan | University of
California-Davis University of Arizona* University of Louisiana at Lafayette* |
Insertional Mutagenesis Tools for Functional Genomics in Rice | $822,782 | 3 |
0211863 | Tyler, Brett | Virginia Polytechnic and State
University Ohio State University Research Foundation* |
Dissecting Phytophthora Resistance in Soybean using Expression Profiling and Analysis of Quantitative Trait Loci | $6,764,462 | 5 |
0211935 | van Wijk, Klaas | Cornell University University of Nebraska-Lincoln* Boyce Thompson Institute* |
From Proplastid to Chloroplast: Understanding Plastid Differentiation in Maize Through Microarray and Proteome Analysis | $3,827,647 | 5 |
0211700 | Wendel, Jonathan | Iowa State University University of Arizona* University of Georgia Research Foundation Inc* |
Comparative Evolutionary Genomics of Cotton | $4,197,862 | 5 |
Young Investigator Awards in Plant Genome Research (YIA-PGR) | |||||
Award # | Principal Investigator | Institution | Title | Total Award ($) | Total Duration (Yrs) |
0227357 | Bogdanove, Adam | Iowa State University | YIA-PGR: Genomics of Rice Susceptibility to Bacterial Diseases | $1,095,589 | 5 |
0227618 | Gang, David | University of Arizona | YIA-PGR: Functional Genomics of Plant Metabolism in Model Rhizome Species | $1,114,787 | 5 |
0227414 | Jackson, Scott | Purdue University | YIA-PGR: Comparative Genomics of Rice: Reconstructing Rice Chromosome 1 in Related Species | $1,630,537 | 5 |
0443991 (0227436) |
Lawrence, Christopher | Virginia Polytechnic and State
University Colorado State University^ North Carolina State University* |
YIA-PGR: The Alternaria-Brassicaceae Pathosystem as a Model for Necrotropic Fungal-Plant Interactions | $1,363,771 | 4 |
0408768 (0227310) |
Springer, Nathan | University of Minnesota-Twin
Cities University of Wisconsin-Madison^ |
YIA-PGR: Assessment of the Use of Oligonucleotide Microarrays for Single Nucleotide Polymorphism Detection in Maize | $450,000 | 2 |
0227541 | Van der Knaap, Esther | Ohio State University Research Foundation | YIA-PGR: Genetic, Molecular and Developmental Analysis of Variation in Tomato Fruit Morphology | $1,109,980 | 5 |
0227314 | Vision, Todd | University of North Carolina at Chapel Hill | YIA-PGR: Tools for Plant Comparative Genomics | $1,010,845 | 5 |
0227103 | Weinig, Cynthia | University of Minnesota-Twin
Cities University of California-Davis* |
YIA-PGR: Molecular Evolutionary Genetics of Crop and Weed Responses to Crowding | $1,734,804 | 5 |
Fiscal Year 2001 Awards | |||||
Award # | Principal Investigator | Institution | Title | Total Award ($) | Total Duration (Yrs) |
0110254 | Brendel, Volker | Iowa State University | PlantGDB - Plant Genome Database and Analysis Tools | $158,996 | 2 |
0110069 | Comstock, Jonathan | Boyce Thompson
Institute University of North Carolina at Chapel Hill* Cornell University* Oklahoma State University* |
Genomic Analysis of Plant Water Use Efficiency | $3,995,267 | 4 |
0110206 | Cook, Douglas | University of
California-Davis Institute for Genomic Research* Samuel Roberts Noble Foundation Inc* University of Minnesota-Twin Cities* |
Towards the Complete Gene Inventory and Function of the Medicago truncatula Genome | $5,803,691 | 4 |
0115642 | Dean, Ralph | North Carolina State
University Clemson University* Ohio State University Research Foundation* Purdue University* Texas A&M Research Foundation* University of Arizona* University of Kentucky Research Foundation* |
Whole Genome Analysis of Pathogen-Host Recognition and Subsequent Responses in the Rice Blast Patho-System | $5,860,002 | 4 |
0110173 | Delmer, Deborah | University of
California-Davis Alabama A&M University Research Institution* Texas Tech University* Texas A&M Research Foundation* |
Functional Genomics of Cellulose Synthesis in Economically Important Plants | $471,134 | 1 |
0115684 | dePamphilis, Claude | Pennsylvania State
University Cornell University* University of Alabama-Tuscaloosa* University of Florida* University of Michigan-Ann Arbor* |
The Floral Genome Project | $7,399,286 | 5 |
0110035 | Drews, Gary | University of Utah | Gene Targeting in Plants | $1,564,877 | 3 |
0110189 | Hake, Sarah | University of
California-Berkeley Cold Spring Harbor Laboratory* Iowa State University* University of Illinois at Urbana-Champaign* University of Missouri-Saint Louis* Stanford University* University of California-San Diego* |
Regulation of Inflorescence Architecture in Maize | $5,343,199 | 5 |
0110115 | Irish, Vivian | Yale University | Comparative Genomics of Angiosperm MADS-Box Genes | $435,432 | 2 |
0110154 | Leach, Jan | Kansas State University Iowa State University* Ohio State University Research Foundation* University of California-Davis* |
Activation-Tagged and Deletion Mutants and cDNA Microarrays for Functional Genomics of Rice | $500,000 | 2 |
0110512 | Lemaux, Peggy | University of
California-Berkeley Oregon State University* USDA-ARS* |
Transposon-Mediated Functional Genomics in Barley | $1,532,663 | 5 |
0110143 | Martienssen, Robert | Cold Spring Harbor Laboratory | Systematic Transposon Mutagenesis of the Maize Gene Space | $1,990,821 | 4 |
0110004 | McCouch, Susan | Cornell University | Linking Rice, Arabidopsis and the Grasses to Explore Natural Genetic Variation | $1,356,830 | 3 |
0109732 | Mendes, Pedro | Virginia Polytechnic and State
University Samuel Roberts Noble Foundation Inc* Southeastern Oklahoma State University* |
An Integrated Approach to Functional Genomics and Bioinformatics in a Model Legume | $3,587,432 | 4 |
0244435 (0110528) |
Meyers, Blake | University of Delaware University of California-Davis^ |
Signature Sequencing for Quantitative Expression Analysis and Gene Discovery | $966,641 | 2 |
0110168 | Newton, Kathleen | University of
Missouri-Columbia University of Utah* Washington University* |
Sequence, Evolution and Expression of Mitochondrial Genomes of the Genus Zea | $2,339,813 | 3 |
0115911 | Ozias-Akins, Peggy | University of Georgia Research
Foundation Inc Texas A&M Research Foundation* |
Aligning Physical and Functional Maps of a Genomic Region Spanning the Apomixis Locus by Exploiting Model Cereal Genomics | $1,132,318 | 4 |
0115903 | Paterson, Andrew | University of Georgia Research
Foundation Inc Clemson University* Cornell University* |
Grass Genome Biodiversity: Application of Genomic Tools from Sorghum and Related Grasses to Identify and Analyze Variation Structure and Function of C4 Grass Genomes | $3,962,498 | 4 |
0110170 | Peterson, Thomas | Iowa State University | Nested Deletions: A New Tool for Plant Genomics Research | $648,549 | 3 |
0110134 | Phillips, Ronald | University of Minnesota-Twin Cities | A Radiation Hybrid System for the Genetic and Physical Mapping of the Corn Genome | $3,081,245 | 4 |
0110140 | Pratt, Lee | University of Georgia Research
Foundation Inc Texas A&M Research Foundation* |
Functional Analysis of the Sorghum Transcriptome | $3,576,196 | 3 |
0116076 | Tanksley, Steven | Cornell University Boyce Thompson Institute* Clemson University* |
Exploitation of Tomato as a Model for Comparative and Functional Genomics | $6,499,895 | 5 |
0110124 | Thomashow, Michael | Michigan State University Ohio State University Research Foundation* Oregon State University* Carnegie Institute of Washington (CA)* |
Low Temperature Regulatory Circuits and Gene Regulons in Higher Plants | $5,072,963 | 5 |
0110023 | Wang, Kan | Iowa State University North Carolina State University* Purdue University* University of Wisconsin-Madison* |
Establishment of Robust Maize Transformation Systems | $4,227,981 | 5 |
Fiscal Year 2000 Awards | |||||
Award # | Principal Investigator | Institution | Title | Total Award ($) | Total Duration (Yrs) |
0077756 | Barkan, Alice | University of Oregon Eugene Boyce Thompson Institute* Cornell University* University of Nebraska-Lincoln* |
Functional Genomics of Chloroplast Biogenesis | $2,732,420 | 4 |
0077503 | Bird, David | North Carolina State
University Santa Fe Institute* University of North Carolina at Chapel Hill* Washington University* |
Genomic Analysis of a Nematode-Plant Interaction: A Tool to Study Plant Biology | $2,607,829 | 3 |
0076892 | Brutnell, Thomas | Boyce Thompson Institute | Regional Mutagenesis Utilizing Activator (Ac) in Maize | $1,080,369 | 5 |
0077719 | Carpita, Nicholas | Purdue University University of Wisconsin-Madison* |
A High Throughput Screen to Identify and Clone Maize and Arabidopsis Cell Wall Biogenesis-Related Genes | $600,000 | 2 |
0077622 | Collmer, Alan | Cornell University Boyce Thompson Institute* Institute for Genomic Research* Kansas State University* University of Missouri-Columbia* University of Nebraska-Lincoln* |
Functional Genomics of the Interactions of Tomato and Pseudomonas syringae pv tomato DC3000 | $4,996,020 | 5 |
0077510 | Dinesh-Kumar, Savithramma | Yale University | Development of Vectors for Virus-Induced Plant Gene Silencing | $635,624 | 2 |
0077766 | Dvorak, Jan | University of
California-Davis Kansas State University* Texas A&M Research Foundation* |
Assessment of the Insular Organization of the Wheat D Genome by Physical Mapping | $4,435,386 | 4 |
0335498 (0077769) |
Estelle, Mark | Indiana University University of Texas as Austin^ Boston University* Rice University* University of Massachusetts-Amherst* University of Minnesota-Twin Cities* |
Development of New Genetic Resources for Auxin Biology | $1,348,086 | 3 |
0077378 | Guerinot, Mary Lou | Dartmouth College Northern Arizona University* The Scripps Research Institute* University of California-San Diego* University of Missouri-Columbia* |
Gene Discovery in Aid of Plant Nutrition, Human Health and Environmental Remediation | $4,414,643 | 4 |
0077737 | Henikoff, Steven | Fred Hutchinson Cancer Research
Center Institute for Systems Biology* |
Targeting Induced Local Lesions IN Genomes (TILLING) for Plant Functional Genomics | $2,633,390 | 2 |
0077617 | Lam, Eric | Rutgers University New
Brunswick Cold Spring Harbor Laboratory* |
Chromatin Charting: Organization and Dynamics of Plant Nuclear DNA in situ | $4,326,623 | 5 |
0077676 | McCarty, Donald | University of Florida Iowa State University* Rutgers University New Brunswick* University of Arizona* |
Functional Genomics of Endosperm Development in Maize | $4,999,995 | 5 |
0077713 | Mullet, John | Texas A&M Research Foundation | Gene Mapping in Sorghum Using Direct Selection Technology | $740,001 | 3 |
0077774 | Osborn, Thomas | University of
Wisconsin-Madison Cold Spring Harbor Laboratory* Texas A&M Research Foundation* Purdue University* University of Washington* |
Functional Genomics of Plant Polyploids | $4,996,886 | 5 |
0077692 | Sheen, Jen | Massachusetts General
Hospital Iowa State University* |
Functional Analysis of Plant Mitogen-Activated Protein Kinase Cascades in Stress and Hormone Signaling | $4,559,130 | 5 |
0077709 | Wessler, Susan | University of Georgia Research
Foundation Inc Clemson University* Cornell University* Washington University* |
Transposable Elements in Rice: A Whole Genome Approach | $3,415,866 | 5 |
Fiscal Year 1999 Awards | |||||
Award # | Principal Investigator | Institution | Title | Total Award ($) | Total Duration (Yrs) |
9975866 | Baker, Barbara | University of
California-Berkeley Cornell University* Institute for Genomic Research* University of Wisconsin-Madison* University of Minnesota-Twin Cities* |
Tools for Potato Structural and Functional Genomics | $5,300,000 | 3 |
9975793 | Bennetzen, Jeffrey | Purdue University National Center for Genome Resources* University of California-Davis* Washington State University* |
Assessment of Gene Content, Colinearity and Evolution in Barley, Maize, Rice, Sorghum and Wheat | $2,008,066 | 2 |
9975827 | Dawe, R. Kelly | University of Georgia Research
Foundation Inc University of Missouri-Columbia* University of Wisconsin-Madison* |
Functional Genomics of Maize Centromeres | $2,510,000 | 5 |
0196098 (9975718) |
Ecker, Joseph | The Salk Institute for Biological
Studies University of Pennsylvania^ Stanford University* University of California-Berkeley* |
Global Expression Studies for the Arabidopsis Genome | $7,600,000 | 3 |
9975715 | Gelvin, Stanton | Purdue University SUNY at Buffalo* Frederich Miescher Institute* |
Identification of Plant Genes Involved in Agrobacterium-Mediated Transformation | $4,440,751 | 5 |
9975930 | Jorgensen, Richard | University of Arizona Johns Hopkins University* Purdue University* University of Missouri-Columbia* University of Wisconsin-Madison* Washington University* |
Chromatin-Based Control of Gene Expression in Maize and Arabidopsis | $10,500,000 | 5 |
9975920 | Quackenbush, John Ketchum, Karen^ |
Institute for Genomic Research | High-Density DNA Microarrays for Global Gene Expression Studies in Plants | $2,179,049 | 3 |
9975618 | Messing, Joachim | Rutgers University New
Brunswick Purdue University* |
Colinearity of Maize and Sorghum at the DNA Sequence Level | $3,500,000 | 4 |
9975971 | Michelmore, Richard | University of
California-Davis Kansas State University* University of Wisconsin-Madison* |
Functional and Comparative Genomics of Disease Resistance Gene Homologs | $2,530,000 | 3 |
9975989 | Qualset, Calvin | University of
California-Davis Colorado State University* Cornell University* Kansas State University* North Dakota State University* Texas Tech University* University of California-Riverside* University of Minnesota-Twin Cities* University of Missouri-Columbia* University of Nebraska-Lincoln* Washington State University* |
Structure and Function of the Expressed Portion of the Wheat Genomes | $7,300,000 | 4 |
9975815 | Raikhel, Natasha | Michigan State University | Functional Genomics of Hemicellulose Biosynthesis | $2,250,000 | 3 |
9975868 | Schnable, Patrick | Iowa State University Jackson Laboratory* |
High-Throughput Mapping Tools for Maize Genomics | $2,947,701 | 3 |
9975606 | Schwartz, David | University of Wisconsin-Madison | Genome-Wide Restriction Map of Rice by Optical Mapping | $1,529,544 | 3 |
9975806 | Sederoff, Ronald | North Carolina State
University Texas A&M Research Foundation* University of California-Davis* University of Minnesota-Twin Cities* Institute of Paper Technology* |
Genomics of Wood Formation in Loblolly Pine | $4,450,000 | 3 |
9975808 | Walker, John | University of
Missouri-Columbia The Scripps Research Institute* University of Arizona* University of California-San Diego* University of Florida* University of New Hampshire* University of North Carolina at Chapel Hill* |
Functional Genomics of Plant Phosphorylation | $2,983,734 | 3 |
Fiscal Year 1998 Awards | |||||
Award # | Principal Investigator | Institution | Title | Total Award ($) | Total Duration (Yrs) |
0223905 (9813360) |
Bohnert, Hans | University of Illinois at
Urbana-Champaign University of Arizona^ Purdue University* Oklahoma State University* |
Genomics of Plant Stress Tolerance | $8,270,704 | 4 |
9813365 | Cande, W. Zacheus | University of California-Berkeley | An Integrated Map of Cytological, Genetic and Physical Information of Maize | $762,977 | 4 |
9872655 | Coe, Edward | University of
Missouri-Columbia University of Georgia Research Foundation Inc* Clemson University* |
Comprehensive Genetic, Physical and Database Resources For Maize | $11,075,485 | 5 |
0196179 (9872664) |
Cook, Douglas | University of
California-Davis Texas A&M Research Foundation^ University of Georgia Research Foundation Inc* University of Minnesota-Twin Cities* |
Medicago truncatula as the Nodal Species for Comparative and Functional Legume Genomics | $3,440,561 | 3 |
9872627 | Delmer, Deborah | University of
California-Davis Texas Tech University* |
Comparative Functional Genomics of the celA Gene Family in Plants | $819,818 | 3 |
0096033 (9872631) |
Doebley, John | University of
Wisconsin-Madison University of Minnesota-Twin Cities^ North Carolina State University* University of California-Irvine* |
Evolutionary Genomics of Maize | $5,847,106 | 5 |
9813364 | Dooner, Hugo | Rutgers University New Brunswick | Use of the Transposon AC as a Gene-Searching Engine in the Maize Genome | $1,334,173 | 3 |
9872629 | Fedoroff, Nina | Pennsylvania State University | New DNA Microarray Detection Techniques in the Study of Stress-Induced Changes in Plant Gene Expression | $1,801,988 | 3 |
9872638 | Ohlrogge, John Green, Pamela^ |
Michigan State
University Carnegie Institute of Washington (CA)* Stanford University* Yale University* University of Wisconsin-Madison* |
A Functional Analysis of the Arabidopsis Genome via Gene Disruption and Global Gene Expression Analysis | $8,700,000 | 3 |
9872636 | Lam, Eric | Rutgers University New Brunswick | Chromatic Charting: Organization and Dynamics of Plant Nuclear DNA in situ | $676,234 | 2 |
9872677 | Hawke, James Lemieux, Bertrand^ |
University of Delaware University of Illinois at Urbana-Champaign* Massachusetts General Hospital* |
Genomic Analysis of Seed Quality Traits in Corn | $2,197,783 | 3 |
9872635 | Lightfoot, David | Southern Illinois
University Texas A&M Research Foundation* |
Integrative Physical Mapping of the Soybean Genome | $1,303,644 | 3 |
9872644 | Martienssen, Robert | Cold Spring Harbor
Laboratory University of California-Berkeley* |
Center for Comparative Genomics in Model and Crop Plants | $1,842,208 | 3 |
9872650 | Phillips, Ronald | University of Minnesota-Twin Cities | A Radiation Hybrid and Cloning System for the Genetic and Physical Mapping of the Corn Genome | $1,830,669 | 3 |
9872649 | Paterson, Andrew Pratt, Lee^ |
University of Georgia Research
Foundation Inc Cornell University* Clemson University* |
Cross-Linked Sorghum and Rice Physical Maps as a Foundation for Analyzing Genome Structure, Function and Variation in C4 Grasses | $3,247,755 | 3 |
9872641 | Preuss, Daphne | University of Chicago Texas A&M Research Foundation* |
Plant Centromere Functions Defined by Tetrad Analysis and Artificial Chromosomes | $2,274,211 | 5 |
9813361 | Sung, Z. Renee | University of California-Berkeley | Repackaging the Corn Genome for Molecular Mapping | $301,072 | 2 |
9872617 | Tanksley, Steven | Cornell University Boyce Thompson Institute* Texas A&M Research Foundation* |
Development of Tools for Tomato Functional Genomics: Application to Analysis of Fruit Development, Responses to Pathogens, and Genome Synteny with Arabidopsis | $4,648,484 | 3 |
9813392 | Kirkness, Ewen Venter, Craig^ Ronning, Catherine^ |
Institute for Genomic Research | Generation of a Tomato EST Database | $3,246,725 | 3 |
9872565 | Vodkin, Lila | University of Illinois at
Urbana-Champaign Iowa State University* University of Missouri-Columbia* University of Minnesota-Twin Cities* Northern Arizona University* |
A Functional Genomics Program for Soybean | $4,460,359 | 4 |
9872657 | Walbot, Virginia | Stanford University University of Arizona* University of California-Berkeley* University of California-San Diego* University of Illinois at Urbana-Champaign* Iowa State University* |
Maize Gene Discovery, Sequencing and Phenotypic Analysis | $12,548,370 | 5 |
9872630 | Wilkins, Thea | University of
California-Davis University of Georgia Research Foundation Inc* Texas Tech University* Iowa State University* Clemson University* |
Structure and Function of the Cotton Genome: An Integrated Analysis of the Genetics, Development and Evolution of the Cotton Fiber | $3,800,001 | 3 |
9872676 | Tomkins, Jeffrey Wing, Rod^ |
Clemson University | A BAC Library Resource for Crop Genomics | $616,521 | 5 |
*
Subaward
^former PI/lead institution